R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Functions
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Classification

Results 1 - 7 of 7 found.
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getgo (Package: goseq) :

Obtains all gene ontology (GO) categories associated with a set of genes using the relevant organism package.

● Data Source: BioConductor
● Keywords:
● Alias: getgo
● 0 images

getlength (Package: goseq) :

Gets the length of each gene in a vector.

● Data Source: BioConductor
● Keywords:
● Alias: getlength
● 0 images

goseq (Package: goseq) :

Does selection-unbiased testing for category enrichment amongst differentially expressed (DE) genes for RNA-seq data. By default, tests gene ontology (GO) categories, but any categories may be tested.

● Data Source: BioConductor
● Keywords:
● Alias: goseq
● 1 images

makespline (Package: goseq) :

Fits a monotonic cubic spline to the data provided, using the penalized constrained least squares method from the mgcv package.

● Data Source: BioConductor
● Keywords:
● Alias: makespline
● 1 images

nullp (Package: goseq) :

Calculates a Probability Weighting Function for a set of genes based on a given set of biased data (usually gene length) and each genes status as differentially expressed or not.

● Data Source: BioConductor
● Keywords:
● Alias: nullp
● 1 images

plotPWF (Package: goseq) :

Plots the Probability Weighting Function created by nullp by binning together genes.

● Data Source: BioConductor
● Keywords:
● Alias: plotPWF
● 1 images

supportedOrganisms (Package: goseq) :

Lists which genomes and gene ids are supported for gene lengths and for gene ontology

● Data Source: BioConductor
● Keywords:
● Alias: supportedOrganisms
● 0 images