R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
All

Data Type

Packages
Functions
Images
Data set

Classification

Results 1 - 10 of 23 found.
[1] < 1 2 3 > [3] Sort:

IBDsegment-class (Package: hapFabia) : IBDsegment instances and methods

IBDsegment is a class to store characteristics of an IBD segment in one of its instances. Characteristics of an IBD segment include its genomic position, its length, the individuals/chromosomes that belong to it, the tagSNVs that tag/mark it, etc.

● Data Source: BioConductor
● Keywords: classes, hplot, methods
● Alias: IBDsegment-class, IBDsegment-method
● 2 images

IBDsegmentList-class (Package: hapFabia) : IBDsegmentList instances and methods

IBDsegmentList is a class to store a list of IBD segments with its statistics. Lists can be merged or analyzed in subsequent steps.

● Data Source: BioConductor
● Keywords: classes, hplot, methods
● Alias: IBDsegmentList-class, IBDsegmentList-method
● 0 images

IBDsegmentList2excel (Package: hapFabia) : Store an IBD segment list in EXCEL / csv format

IBDsegmentList2excel: R implementation of IBDsegmentList2excel.

● Data Source: BioConductor
● Keywords: file
● Alias: IBDsegmentList2excel, IBDsegmentList2excel,IBDsegmentList,character-method, IBDsegmentList2excel,IBDsegmentList-method
● 0 images

analyzeIBDsegments (Package: hapFabia) : Loop over extracted IBD segments

analyzeIBDsegments: R implementation of analyzeIBDsegments.

● Data Source: BioConductor
● Keywords: models,multivariate,cluster
● Alias: analyzeIBDsegments
● 0 images

compareIBDsegmentLists (Package: hapFabia) : Hierarchical clustering of

compareIBDsegmentLists: R implementation of compareIBDsegmentLists.

● Data Source: BioConductor
● Keywords: models,multivariate,cluster
● Alias: compareIBDsegmentLists, compareIBDsegmentLists,IBDsegmentList,ANY,character,ANY,ANY,numeric,numeric-method, compareIBDsegmentLists,IBDsegmentList-method
● 0 images

extractIBDsegments (Package: hapFabia) : Extract IBD segments from a

extractIBDsegments: R implementation of extractIBDsegments.

● Data Source: BioConductor
● Keywords: models,multivariate,cluster
● Alias: extractIBDsegments, extractIBDsegments,Factorization,list,data.frame,character,matrix,numeric,numeric,numeric,numeric,numeric,numeric,numeric,numeric-method, extractIBDsegments,Factorization-method
● 0 images

findDenseRegions (Package: hapFabia) : Find accumulations of values via histogram counts

findDenseRegions: R implementation of findDenseRegions.

● Data Source: BioConductor
● Keywords: models,multivariate,cluster
● Alias: findDenseRegions
● 0 images

hapFabia (Package: hapFabia) : IBD segment extraction by FABIA

hapFabia: R implementation of the hapFabia method.

● Data Source: BioConductor
● Keywords: models,multivariate,cluster
● Alias: hapFabia
● 2 images

hapFabiaVersion (Package: hapFabia) : Display version info for package pkg{hapFabia

hapFabiaVersion displays version information about the package.

● Data Source: BioConductor
● Keywords: models,multivariate,cluster
● Alias: hapFabiaVersion
● 0 images

identifyDuplicates (Package: hapFabia) : Identify duplicates of IBD segments

identifyDuplicates: R implementation of identifyDuplicates.

● Data Source: BioConductor
● Keywords: models,multivariate,cluster
● Alias: identifyDuplicates
● 0 images