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Functions to combine person-specific covariates to pair-specific
● Data Source:
CranContrib
● Keywords:
● Alias: pairDiff, pairSum
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Print a linkage.tests object, made within ibdreg. For each test, print the score test statistic, degree(s) of freedom, and pvalue at the position with the smallest pvalue.
● Data Source:
CranContrib
● Keywords:
● Alias: print.linkage.tests
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calculate moments (mean, variance) for simulated ibd vectors for an individual predigree from sim.mark.prop
● Data Source:
CranContrib
● Keywords:
● Alias: ibd.moments
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Print results stored in an ibdreg object, showing the function call, the counts of relative pairs used, and the tests performed for linkage with and without covariates on the relative pairs. A table is given to show the test at the chromosome position which had the minimum p-value.
● Data Source:
CranContrib
● Keywords:
● Alias: print.ibdreg
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Compute mixture proportions, w, for mixture chi-square distribution when k=0..3, where k = df of chi-squares
● Data Source:
CranContrib
● Keywords:
● Alias: chibar3.w
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Singular value decomposition (svd) is used to compute a generalized inverse of input matrix.
● Data Source:
CranContrib
● Keywords:
● Alias: Ginv
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Create and return a dataframe of ped.id, person1.id, person2.id, and ibd information from merlin
● Data Source:
CranContrib
● Keywords:
● Alias: ibd.df.merlin
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create an ibd.var object from a temporary output file produced by exact.ibd.var.pl perl script, which uses exact computations from merlin
● Data Source:
CranContrib
● Keywords:
● Alias: exact.ibd.var
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create a data frame for relative pairs containing identifiers, response, and covariates
● Data Source:
CranContrib
● Keywords:
● Alias: create.pairs.frame, create.pairs.frame.cvec
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Plot lines connecting the the -log10 of pvalues for a series of tests
● Data Source:
CranContrib
● Keywords:
● Alias: plotpval
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providing 
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