ibdreg

Package: ibdreg
Version: 0.2.5
Date: 2013-4-16
Title: Regression Methods for IBD Linkage With Covariates
Author: Jason P. Sinnwell and Daniel J. Schaid
Maintainer: Jason P. Sinnwell <Sinnwell.Jason@mayo.edu>
Description: A method to test genetic linkage with covariates by
regression methods with response IBD sharing for relative
pairs. Account for correlations of IBD statistics and
covariates for relative pairs within the same pedigree.
License: GPL-2 | file LICENSE
Depends: R (>= 2.15.0)
URL: http://mayoresearch.mayo.edu/mayo/research/schaid_lab/software.cfm
Packaged: 2013-04-19 20:17:37 UTC; sinnwell
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-04-20 07:47:38

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'ibdreg' ...
** package 'ibdreg' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c lsConstrain.c -o lsConstrain.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c sim.mark.prop.c -o sim.mark.prop.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o ibdreg.so lsConstrain.o sim.mark.prop.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/ibdreg/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'ibdreg'
    finding HTML links ... done
    Ginv                                    html  
    align.ibd.var                           html  
    chibar3.w                               html  
    create.ibd.dat                          html  
    create.pairs.frame                      html  
    exact.ibd.var                           html  
    ibd.df.merlin                           html  
    ibd.moments                             html  
    ibdreg                                  html  
    linkage.all                             html  
    linkage.tests                           html  
    lsConstrain.fit                         html  
    mergeIBD                                html  
    minpRows                                html  
    pairSum                                 html  
    pchibar                                 html  
    plot.ibdreg                             html  
    plot.ibdreg.unexpect                    html  
    plot.linkage.all                        html  
    plot.linkage.tests                      html  
    plotpval                                html  
    print.ibd.var                           html  
    print.ibdreg                            html  
    print.linkage.all                       html  
    print.linkage.tests                     html  
    printBanner                             html  
    resources                               html  
    sim.ibd.setup                           html  
    sim.ibd.var                             html  
    sim.mark.prop                           html  
** building package indices
** testing if installed package can be loaded
* DONE (ibdreg)
Making 'packages.html' ... done