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Collect cell features from a given set of cells.
● Data Source:
BioConductor
● Keywords:
● Alias: collectCellFeatures
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0 images
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countObjects
(Package: imageHTS) :
Count the number of objects in a segmented image
Count the number of objects in a segmented image.
● Data Source:
BioConductor
● Keywords:
● Alias: countObjects
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0 images
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extractFeatures
(Package: imageHTS) :
Extract features from segmented images.
Extract features from segmented images.
● Data Source:
BioConductor
● Keywords:
● Alias: extractFeatures
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0 images
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fileHTS
(Package: imageHTS) :
Get access to screen data files
fileHTS builds the path or URL pointing to a screen data file. readHTS reads the file pointed by fileHTS.
● Data Source:
BioConductor
● Keywords:
● Alias: fileHTS, readHTS
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0 images
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getImageConf
(Package: imageHTS) :
Get the imageHTS configuration
Get the imageHTS configuration from an imageHTS object.
● Data Source:
BioConductor
● Keywords:
● Alias: getImageConf
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0 images
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getUnames
(Package: imageHTS) :
Get well unique names
Build valid well unique names, according to the screen layout and to input filter arguments. Each well in the screen has an unique name, based on its plate, replicate, row and column indices.
● Data Source:
BioConductor
● Keywords:
● Alias: getUnames
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0 images
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getWellFeatures
(Package: imageHTS) :
Get well metadata, features and annotation information
Get well metadata, features and annotation information.
● Data Source:
BioConductor
● Keywords:
● Alias: getWellFeatures
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0 images
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Highlight segmented objects in an image.
● Data Source:
BioConductor
● Keywords:
● Alias: highlightSegmentation
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0 images
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imageHTS is an R package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote screen data, facilitating the dissemination of high-throughput microscopy-based screens.
● Data Source:
BioConductor
● Keywords: package
● Alias: imageHTS, imageHTS-class
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installCellPicker and installWebQuery install the cellPicker and webQuery modules in the local project directory.
● Data Source:
BioConductor
● Keywords:
● Alias: installCellPicker, installWebQuery
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0 images
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providing 
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