geneAnnotation
(Package: intansv) :
Annotation of genes affected by structural variations
Report the details of genes affected by structural variations.
● Data Source:
BioConductor
● Keywords:
● Alias: geneAnnotation
●
0 images
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methodsMerge
(Package: intansv) :
Integrate structural variations predicted by different methods
Integrate predictions of different tools to provide more reliable structural variations.
● Data Source:
BioConductor
● Keywords:
● Alias: methodsMerge
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0 images
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plotChromosome
(Package: intansv) :
Display the chromosome distribution of structural variations
Display the chromosome distribution of structural variations by splitting the chromosomes into windows of specific size and counting the number of structural variations in each window.
● Data Source:
BioConductor
● Keywords:
● Alias: plotChromosome
●
1 images
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plotRegion
(Package: intansv) :
Display structural variations in a specific genomic region
Display the structural variations in a specific genomic region in circular view.
● Data Source:
BioConductor
● Keywords:
● Alias: plotRegion
●
1 images
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readBreakDancer
(Package: intansv) :
Read in the structural variations predicted by breakDancer
Reading in the structural variations predicted by breakDancer, filtering low quality predictions and merging overlapping predictions.
● Data Source:
BioConductor
● Keywords:
● Alias: readBreakDancer
●
0 images
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readCnvnator
(Package: intansv) :
Read in the structural variations predicted by CNVnator
Reading the structural variations predicted by CNVnator, filtering low quality predictions and merging overlapping predictions.
● Data Source:
BioConductor
● Keywords:
● Alias: readCnvnator
●
0 images
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readDelly
(Package: intansv) :
Read in the structural variations predicted by DELLY
Reading the structural variations predicted by DELLY, filtering low quality predictions and merging overlapping predictions.
● Data Source:
BioConductor
● Keywords:
● Alias: readDelly
●
0 images
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readLumpy
(Package: intansv) :
Read in the structural variations predicted by Lumpy
Reading the structural variations predicted by Lumpy, filtering low quality predictions and merging overlapping predictions.
● Data Source:
BioConductor
● Keywords:
● Alias: readLumpy
●
0 images
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readPindel
(Package: intansv) :
Read in the structural variations predicted by Pindel
Reading the structural variations predicted by Pindel, filtering low quality predictions and merging overlapping predictions.
● Data Source:
BioConductor
● Keywords:
● Alias: readPindel
●
0 images
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readSoftSearch
(Package: intansv) :
Read in the structural variations predicted by SoftSearch
Reading the structural variations predicted by SoftSearch, filtering low quality predictions and merging overlapping predictions.
● Data Source:
BioConductor
● Keywords:
● Alias: readSoftSearch
●
0 images
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