intansv

Package: intansv
Title: Integrative analysis of structural variations
Description: This package provides efficient tools to read and integrate
structural variations predicted by popular softwares. Annotation and
visulation of structural variations are also implemented in the
package.
Version: 1.10.0
Author: Wen Yao <ywhzau@gmail.com>
Maintainer: Wen Yao <ywhzau@gmail.com>
biocViews: Genetics, Annotation, Sequencing, Software
Depends: R (>= 2.14.0), plyr, ggbio, GenomicRanges
Imports: BiocGenerics, IRanges
License: Artistic-2.0
NeedsCompilation: no
Packaged: 2016-05-04 05:02:23 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'intansv' ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio'
** help
*** installing help indices
  converting help for package 'intansv'
    finding HTML links ... done
    geneAnnotation                          html  
    methodsMerge                            html  
    plotChromosome                          html  
    plotRegion                              html  
    readBreakDancer                         html  
    readCnvnator                            html  
    readDelly                               html  
    readLumpy                               html  
    readPindel                              html  
    readSoftSearch                          html  
    readSvseq                               html  
    svAnnotation                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio'
* DONE (intansv)
Making 'packages.html' ... done