The object stores the haplotype coding for each of the candidate brake-points. It is typically generated by calling the function codeHaplo on a GenoDat object.
accBic
(Package: inveRsion) :
accBic computes "accuracy" from "inversionList"
accBic computes the accuracy of the classification of chromosomes into previously known inverted and non-inverted populations. The classification is obtained from a majority vote of the classifications produced by the trial segment models whose BIC is greater than a given threshold.
These objects hold the accuracy computation for the classification of chromosomes into inverted or non-inverted population for increasing levels of BIC thresholds.
The function labels the haplotypes of size blockSize around each candidate brake-point. For labeling genotype data, the function takes objects of class genoDat as main argument. For phased data, this argument should be ignored and a file name passed instead.
Each row of the matrix represents a trial segment of fixed window size, for which the inversion model has been fit. It lists the left and right brake-points and output of the fitting: Log-likelihood ratio, probability of inversion, entropy, BIC (Bayes Information Criterion) and number of haplotypes.
getROIs-methods
(Package: inveRsion) :
Extracts regions of possible inversion events from "scan"
lists the regions of interest in a matrix, given by the overlapping of significant trial segments (of fixed window seize) that may be part of an inversion event.
providing 
.