R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Data Type

Packages
Functions
Images
Data set

Classification

Results 1 - 10 of 31 found.
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alignSp (Package: mQTL.NMR) :

Alignment of spectrum segement to the spectrum of interest

● Data Source: BioConductor
● Keywords: function
● Alias: alignSp
● 0 images

align_mQTL (Package: mQTL.NMR) :

Recursive Segment-Wise Peak Alignment (RSPA) for accounting peak position variation across metabolomic data

● Data Source: BioConductor
● Keywords: methods
● Alias: align_mQTL
● 0 images

attachSegments (Package: mQTL.NMR) :

Concatenation of test and reference segments to ensure one-to-one correspondence.

● Data Source: BioConductor
● Keywords: function
● Alias: attachSegments
● 0 images

circle_mQTL (Package: mQTL.NMR) :

shows mQTL locations and relations with the metabolome on a central chemical axis

● Data Source: BioConductor
● Keywords: function
● Alias: circle_mQTL
● 1 images

configureRSPA (Package: mQTL.NMR) :

The routine used to change and improve the RSPA algorithm performance

● Data Source: BioConductor
● Keywords: function
● Alias: configureRSPA
● 0 images

format_mGWA (Package: mQTL.NMR) :

This function enables to reformat data into the proper format. The user should provides in input metabolomic file, Genotype file, map file and a file containing sex, age and individual IDs.

● Data Source: BioConductor
● Keywords: function
● Alias: format_mGWA
● 0 images

format_mQTL (Package: mQTL.NMR) :

This function enables to reformat data into the proper format. The user should provides in input metabolomic file, Genotype file and a file containing sex and pgm (parental grandmother).

● Data Source: BioConductor
● Keywords: function
● Alias: format_mQTL
● 0 images

load_datafiles (Package: mQTL.NMR) :

Data files are downloaded from the extdata directory to the user's working directory.

● Data Source: BioConductor
● Keywords: function
● Alias: load_datafiles
● 0 images

load_demo_data (Package: mQTL.NMR) :

Data files are downloaded from the sourceforge.net website to the user's working directory.

● Data Source: BioConductor
● Keywords: function
● Alias: load_demo_data
● 0 images

mQTL.NMR-package (Package: mQTL.NMR) :

mQTL.NMR provides a complete mQTL analysis pipeline for 1H NMR data. Distinctive features include normalisation using most-used approaches, peak alignment using RSPA approach, dimensionality reduction using SRV and binning approaches, and mQTL analysis for animal and human cohorts.

● Data Source: BioConductor
● Keywords:
● Alias: mQTL.NMR, mQTL.NMR-package
● 0 images