annotFilter
(Package: mdgsa) :
Checks and filters an annotation list.
Checks that the annotated genes (those in the annotation list) are consistent with the universe of genes defined by the ranking index. Filters out functional blocks too 'big' or too 'small'.
● Data Source:
BioConductor
● Keywords: annotation, filter, list
● Alias: annotFilter
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annotList2mat
(Package: mdgsa) :
Convert an annotation list into an annotation matrix.
Converts an annotation list to an annotation matrix. The annotation matrix should have 2 columns, the first one with the gene ids; the second one with the annotation ids.
annotMat2list
(Package: mdgsa) :
Convert an annotation matrix into an annotation list.
Converts an annotation matrix to an annotation list. The annotation matrix should have 2 columns, the first one with the gene ids; the second one with the annotation ids.
The function performs a transformation of the ranking index so that its distribution is suitable as independent variable of the logistic regression model.
providing 
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