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Call C programs to R for calculate MRE-seq "-" direction count of each bin.
● Data Source:
BioConductor
● Keywords:
● Alias: calculatecountneg
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The function is used to compute the total MRE-seq number of each bin.
● Data Source:
BioConductor
● Keywords:
● Alias: countMREbin
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The function is used to compute the MRE CpG number of each bin with MRE CpG sites. MRE CpG is some specific CpGs in genome-wide, such as "CCGG", "GCGC" and "CCGC". The specific CpG number is directly bound up with each experiment.
● Data Source:
BioConductor
● Keywords:
● Alias: countMREcpgbin
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The function is used to compute the total MeDIP-seq number of each bin.
● Data Source:
BioConductor
● Keywords:
● Alias: countMeDIPbin
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The function is used to compute the total CpG number of each bin with each CpG site.
● Data Source:
BioConductor
● Keywords:
● Alias: countcpgbin
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Call C programs to R for calculate which CpG are contained in MRE-CpG.
● Data Source:
BioConductor
● Keywords:
● Alias: cpgcount
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The function is used to compute p-value with normal distribution.
● Data Source:
BioConductor
● Keywords:
● Alias: normpdf
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The function is used to compute p-value with normal distribution.
● Data Source:
BioConductor
● Keywords:
● Alias: normpdft1
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Call C programs to R for calculate p-value of each bin with multinomial distribution.
● Data Source:
BioConductor
● Keywords:
● Alias: pmultinom
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The function is used to rank values.
● Data Source:
BioConductor
● Keywords:
● Alias: qvalue.rank
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