methylMnM

Package: methylMnM
Type: Package
Title: detect different methylation level (DMR)
Version: 1.10.0
Date: 2013-04-08
Author: Yan Zhou, Bo Zhang, Nan Lin, BaoXue Zhang and Ting Wang
Maintainer: Yan Zhou<zhouy1016@163.com>
Description: To give the exactly p-value and q-value of MeDIP-seq and MRE-seq data for different samples comparation.
License: GPL-3
LazyLoad: yes
biocViews: Software, DNAMethylation, Sequencing
Depends: R (>= 2.12.1), edgeR, statmod
NeedsCompilation: yes
Packaged: 2016-05-04 05:12:40 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'methylMnM' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c CpGcount.c -o CpGcount.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c calculatecount.c -o calculatecount.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c calculatecount1.c -o calculatecount1.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c calculatecountneg.c -o calculatecountneg.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c pmultinom.c -o pmultinom.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c pvalueclassify.c -o pvalueclassify.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c register.c -o register.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o methylMnM.so CpGcount.o calculatecount.o calculatecount1.o calculatecountneg.o pmultinom.o pvalueclassify.o register.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/methylMnM/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'methylMnM'
    finding HTML links ... done
    CNVnormal                               html  
    MnM-package                             html  
    MnM.qvalue                              html  
    MnM.selectDMR                           html  
    MnM.test                                html  
    calcFactornew                           html  
    calculatecount                          html  
    calculatecount1                         html  
    calculatecountneg                       html  
    countMREbin                             html  
    countMREcpgbin                          html  
    countMeDIPbin                           html  
    countcpgbin                             html  
    cpgcount                                html  
    normpdf                                 html  
    normpdf1                                html  
    pmultinom                               html  
    qvalue.rank                             html  
    removeblacklist                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (methylMnM)
Making 'packages.html' ... done