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This class represents gene ontology annotations.
● Data Source:
BioConductor
● Keywords:
● Alias: MgsaGoSets-class
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MgsaMcmcResults-class
(Package: mgsa) :
Instances of this class are used to hold the additional information
Instances of this class are used to hold the additional information that was provided by running (possibly multiple times) an MCMC algorithm.
● Data Source:
BioConductor
● Keywords:
● Alias: MgsaMcmcResults-class
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The results of an MGSA analysis.
● Data Source:
BioConductor
● Keywords:
● Alias: MgsaResults-class
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MgsaSets-class
(Package: mgsa) :
Sets of items and their annotations
This class describes sets, items and their annotations.
● Data Source:
BioConductor
● Keywords:
● Alias: MgsaSets-class
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alphaMcmcPost
(Package: mgsa) :
posterior estimates of the parameter alpha for each MCMC run
Posterior estimates of the parameter alpha for each MCMC run.
● Data Source:
BioConductor
● Keywords:
● Alias: alphaMcmcPost, alphaMcmcPost,MgsaMcmcResults-method
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alphaPost
(Package: mgsa) :
Posterior for alpha
Realization values, posterior estimate and standard error for the parameter alpha.
● Data Source:
BioConductor
● Keywords:
● Alias: alphaPost, alphaPost,MgsaResults-method
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betaMcmcPost
(Package: mgsa) :
posterior estimates of the parameter beta for each MCMC run
Posterior estimates of the parameter beta for each MCMC run.
● Data Source:
BioConductor
● Keywords:
● Alias: betaMcmcPost, betaMcmcPost,MgsaMcmcResults-method
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betaPost
(Package: mgsa) :
Posterior for beta
Realization values, posterior estimate and standard error for the parameter beta.
● Data Source:
BioConductor
● Keywords:
● Alias: betaPost, betaPost,MgsaResults-method
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createMgsaGoSets
(Package: mgsa) :
This functions takes a 1:1 mapping of go.ids to items and returns
This functions takes a 1:1 mapping of go.ids to items and returns a full MgsaGOSets instance. The structure of GO is gathered from GO.db. It is sufficient to specify just the directly asserted mapping (or annotation), i.e., the most specific ones. The true path rule is taken account, that is, if an item is annotated to a term then it will be also annotated to more general terms (some people prefer to say that just the transitive closure is calculated).
● Data Source:
BioConductor
● Keywords:
● Alias: createMgsaGoSets
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example-go
(Package: mgsa) :
Example GO sets for mgsa
This data is an example GO set for mgsa.
● Data Source:
BioConductor
● Keywords: data
● Alias: example-go, example_go
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providing 
.