R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Data Type

Packages
Functions
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Data set

Classification

Results 1 - 10 of 24 found.
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mosaicsRunAll (Package: mosaics) :

Construct bin-level ChIP-sep data from aligned read files of ChIP and matched control samples, fit a MOSAiCS model, call peaks, export peak calling results, and generate reports for diagnostics.

● Data Source: BioConductor
● Keywords: methods, models
● Alias: mosaicsRunAll
● 0 images

readBins (Package: mosaics) :

Import and preprocess all or subset of bin-level ChIP-sep data, including ChIP data, matched control data, mappability score, GC content score, and sequence ambiguity score.

● Data Source: BioConductor
● Keywords: methods, models
● Alias: readBins
● 0 images

BinData-class (Package: mosaics) : Class "BinData"

This class represents bin-level ChIP-seq data.

● Data Source: BioConductor
● Keywords: classes
● Alias: BinData-class, chrID,BinData-method, coord,BinData-method, gcContent,BinData-method, input,BinData-method, mappability,BinData-method
● 0 images

MosaicsFit-class (Package: mosaics) : Class "MosaicsFit"

This class represents MOSAiCS model fit.

● Data Source: BioConductor
● Keywords: classes
● Alias: MosaicsFit-class, plot,MosaicsFit,ANY-method, print,MosaicsFit-method, seqDepth,MosaicsFit-method, show,MosaicsFit-method
● 0 images

MosaicsFitEst-class (Package: mosaics) : Class "MosaicsFitEst"

This class represents estimates of mosaicsFit function.

● Data Source: BioConductor
● Keywords: classes
● Alias: MosaicsFitEst-class
● 0 images

MosaicsFitParam-class (Package: mosaics) : Class "MosaicsFitParam"

This class represents parameters for mosaicsFit function.

● Data Source: BioConductor
● Keywords: classes
● Alias: MosaicsFitParam-class
● 0 images

MosaicsHMM-class (Package: mosaics) : Class "MosaicsHMM"

This class represents MOSAiCS-HMM model fit.

● Data Source: BioConductor
● Keywords: classes
● Alias: MosaicsHMM-class, estimates,MosaicsHMM-method, plot,MosaicsHMM,missing-method, print,MosaicsHMM-method, seqDepth,MosaicsHMM-method, show,MosaicsHMM-method
● 0 images

MosaicsPeak-class (Package: mosaics) : Class "MosaicsPeak"

This class represents peak calling results.

● Data Source: BioConductor
● Keywords: classes
● Alias: MosaicsPeak-class, bdBin,MosaicsPeak-method, empFDR,MosaicsPeak-method
● 0 images

MosaicsPeakParam-class (Package: mosaics) : Class "MosaicsPeakParam"

This class represents parameters for mosaicsPeak function.

● Data Source: BioConductor
● Keywords: classes
● Alias: MosaicsPeakParam-class
● 0 images

TagData-class (Package: mosaics) : Class "TagData"

This class represents read-level ChIP-seq data.

● Data Source: BioConductor
● Keywords: classes
● Alias: TagData-class
● 0 images