mosaics

Package: mosaics
Type: Package
Title: MOSAiCS (MOdel-based one and two Sample Analysis and Inference
for ChIP-Seq)
Version: 2.10.0
Depends: R (>= 3.0.0), methods, graphics, Rcpp
Imports: MASS, splines, lattice, IRanges, GenomicRanges,
GenomicAlignments, Rsamtools, GenomeInfoDb, S4Vectors
Suggests: mosaicsExample
Enhances: parallel
LinkingTo: Rcpp
SystemRequirements: Perl
Date: 2016-03-15
Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles
Maintainer: Dongjun Chung <dongjun.chung@gmail.com>
Description: This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.
License: GPL (>= 2)
URL: http://groups.google.com/group/mosaics_user_group
LazyLoad: yes
biocViews: ChIPseq, Sequencing, Transcription, Genetics, Bioinformatics
NeedsCompilation: yes
Packaged: 2016-05-04 03:58:42 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'mosaics' ...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c convolution_1S.cpp -o convolution_1S.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c convolution_2S.cpp -o convolution_2S.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c emHMM.cpp -o emHMM.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c stack.cpp -o stack.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c updatePiMat.cpp -o updatePiMat.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c viterbi.cpp -o viterbi.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o mosaics.so convolution_1S.o convolution_2S.o emHMM.o stack.o updatePiMat.o viterbi.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/mosaics/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'print' from package 'base' in package 'mosaics'
Creating a generic function for 'plot' from package 'graphics' in package 'mosaics'
** help
*** installing help indices
  converting help for package 'mosaics'
    finding HTML links ... done
    BinData-class                           html  
    MosaicsFit-class                        html  
    MosaicsFitEst-class                     html  
    MosaicsFitParam-class                   html  
    MosaicsHMM-class                        html  
    MosaicsPeak-class                       html  
    MosaicsPeakParam-class                  html  
    TagData-class                           html  
    adjustBoundary                          html  
    constructBins                           html  
    estimates                               html  
    export                                  html  
    extractReads                            html  
    findSummit                              html  
    fllterPeak                              html  
    generateWig                             html  
    mosaics-internal                        html  
    mosaics-package                         html  
    mosaicsFit                              html  
    mosaicsFitHMM                           html  
    mosaicsPeak                             html  
    mosaicsPeakHMM                          html  
    mosaicsRunAll                           html  
    readBins                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (mosaics)
Making 'packages.html' ... done