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Transform 3D object between template brains
● Data Source:
CranContrib
● Keywords:
● Alias: xform_brain
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0 images
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mirror_brain
(Package: nat.templatebrains) :
Mirror 3D object around a given axis, optionally using a warping registration
Mirror 3D object around a given axis, optionally using a warping registration
● Data Source:
CranContrib
● Keywords:
● Alias: mirror_brain
●
0 images
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download_reg_repo
(Package: nat.templatebrains) :
Download and register git repository containing registrations
Note that these extra registrations will be downloaded to a standard location on your hard drive that will be used for one session to the next. See examples and local_reg_dir_for_url.
● Data Source:
CranContrib
● Keywords:
● Alias: download_reg_repo
●
0 images
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FCWB.demo
(Package: nat.templatebrains) :
Sample template brain: FlyCircuit Whole Brain
This is a sample template brain for testing purposes which is equivalent to the FCWB template brain defined by the nat.flybrains, which should be considered the canonical version.
● Data Source:
CranContrib
● Keywords:
● Alias: FCWB.demo
●
0 images
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as.templatebrain
(Package: nat.templatebrains) :
Use image file or other object to initialise template brain
Use image file or other object to initialise template brain
● Data Source:
CranContrib
● Keywords:
● Alias: as.templatebrain, as.templatebrain.character, as.templatebrain.im3d
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Display an image slice in 3D
● Data Source:
CranContrib
● Keywords:
● Alias: display_slice
●
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templatebrain
(Package: nat.templatebrains) :
Construct templatebrain object for an image registration template
templatebrain objects encapsulate key information for the reference brain in an image registration. Usually this will be a standard template brain used for many registrations. It will normally be much more convenient to use as.templatebrain methods to convert an image file or an im3d object into a templatebrain.
● Data Source:
CranContrib
● Keywords:
● Alias: templatebrain
●
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This function is primarily intended for developer use (it is used inside xform_brain) but may be useful for end users.
● Data Source:
CranContrib
● Keywords:
● Alias: bridging_sequence
●
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add_reg_folders
(Package: nat.templatebrains) :
Set or list local folders containing registrations for nat.templatebrains
add_reg_folders sets options('nat.templatebrains.regdirs') appropriately so that registrations can be found by e.g. xform_brain.
● Data Source:
CranContrib
● Keywords:
● Alias: add_reg_folders, extra_reg_folders
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0 images
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bridging_graph
(Package: nat.templatebrains) :
Make or query connected graph of bridging registrations
These functions are designed for expert use. In general it is recommended to use xform_brain.
● Data Source:
CranContrib
● Keywords:
● Alias: bridging_graph, shortest_bridging_seq
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0 images
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