R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
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Results 1 - 10 of 16 found.
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drawSimpleChrom (Package: quantsmooth) : Draw chromosome-like icons

This function paints chromosomal icons on an existing plot

● Data Source: BioConductor
● Keywords: aplot
● Alias: drawSimpleChrom
● 1 images

helperFunctions (Package: quantsmooth) : arraysmooth Helper functions

quantsmooth Helper functions

● Data Source: BioConductor
● Keywords: internal
● Alias: getChangedIdx
● 0 images

getChangedRegions (Package: quantsmooth) : getChangedRegions

retrieve regions of interest in a vector of intensities using quantile smoothing

● Data Source: BioConductor
● Keywords: attribute
● Alias: getChangedRegions
● 0 images

getLambdaMin (Package: quantsmooth) : getLambdaMin

Test a set of smoothing parameters to find best fit to data

● Data Source: BioConductor
● Keywords: smooth
● Alias: getLambdaMin
● 0 images

grid.chromosome (Package: quantsmooth) : Draw a chromosome using the grid package

A chromosme is drawn including the cytobands

● Data Source: BioConductor
● Keywords: aplot
● Alias: grid.chromosome
● 1 images

lengthChromosome (Package: quantsmooth) : Retrieve chromosomal length

Retrieve human chromosomal length from NCBI data

● Data Source: BioConductor
● Keywords: data
● Alias: lengthChromosome
● 0 images

numericCHR (Package: quantsmooth) : Conversion of chromosome IDs between numeric and character

The function converts chromosomal ids to their numeric form, and the sex chromosomes to values between 98 and 100. This simplifies sorting on chromosome ID

● Data Source: BioConductor
● Keywords: manip
● Alias: characterCHR, numericCHR
● 0 images

paintCytobands (Package: quantsmooth) : Paint a chromosomal idiogram

Paints a human chromosomal idiogram in an existing plot Adapted from the paint.chromosome function in the lodplot package by David L Duffy

● Data Source: BioConductor
● Keywords: aplot
● Alias: paintCytobands
● 1 images

plotChromosome (Package: quantsmooth) : Wrapper for plotSmoothed

This function is a wrapper for plotSmoothed, to make data subsetting easier

● Data Source: BioConductor
● Keywords: hplot
● Alias: plotChromosome
● 0 images

plotSmoothed (Package: quantsmooth) : plotSmoothed

Plot a smoothed line together with the original data values

● Data Source: BioConductor
● Keywords: hplot
● Alias: plotSmoothed
● 1 images