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Search the PhyloWS metadata
● Data Source:
CranContrib
● Keywords: internal
● Alias: phylo_metadata
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drop errors from the search
● Data Source:
CranContrib
● Keywords:
● Alias: drop_nontrees
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Contains a cache of all publication metadata the search_metadata() to pull down when run on 2012-05-12.
● Data Source:
CranContrib
● Keywords: data
● Alias: metadata
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clean_data
(Package: treebase) :
clean the fish.base data into pure ASCII
clean the fish.base data into pure ASCII
● Data Source:
CranContrib
● Keywords: internal
● Alias: clean_data
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show_metadata
(Package: treebase) :
Get the metadata associated with the study in which the phylogeny
Get the metadata associated with the study in which the phylogeny was published.
● Data Source:
CranContrib
● Keywords: internal, utilities
● Alias: show_metadata
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metadata_from_oai
(Package: treebase) :
Internal function for OAI-MPH interface to the Dryad database
Internal function for OAI-MPH interface to the Dryad database
● Data Source:
CranContrib
● Keywords: internal
● Alias: metadata_from_oai
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cache_treebase
(Package: treebase) :
A function to cache the phylogenies in treebase locally
A function to cache the phylogenies in treebase locally
● Data Source:
CranContrib
● Keywords:
● Alias: cache_treebase
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search_treebase
(Package: treebase) :
A function to pull in the phyologeny/phylogenies matching a search query
A function to pull in the phyologeny/phylogenies matching a search query
● Data Source:
CranContrib
● Keywords: utility
● Alias: search_treebase
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remove non-ASCII characters
● Data Source:
CranContrib
● Keywords: internal
● Alias: drop_nonascii
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get_study_id
(Package: treebase) :
return the study.id from the search results.
get_study_id is deprecated, and now can be performed more easily using phylo_metadata and oai_metadata search functions.
● Data Source:
CranContrib
● Keywords: internal
● Alias: get_study_id
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providing 
.