R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Classification

Results 1 - 10 of 13 found.
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TriplexViews-class (Package: triplex) : The TriplexViews class

The TriplexViews class is a container for storing a set of triplexes identified in the same DNA sequence (an DNAString object). Each triplex is defined by its start/end locations, score, P-value, insertion number, type, loop start, loop end and strand identification.

● Data Source: BioConductor
● Keywords: classes, methods
● Alias: TriplexViews, TriplexViews-class, TriplexViews-constructor, class:TriplexViews
● 0 images

ins (Package: triplex) : Insertions accessor

Gets the insertion vector of an object.

● Data Source: BioConductor
● Keywords: methods
● Alias: ins
● 0 images

lend (Package: triplex) : Loop end accessor

Gets the loop ends of an object.

● Data Source: BioConductor
● Keywords: methods
● Alias: lend
● 0 images

lstart (Package: triplex) : Loop start accessor

Gets the loop starts of an object.

● Data Source: BioConductor
● Keywords: methods
● Alias: lstart
● 0 images

lwidth (Package: triplex) : Loop width accessor

Gets the loop widths of an object.

● Data Source: BioConductor
● Keywords: methods
● Alias: lwidth
● 0 images

pvalue (Package: triplex) : P-value accessor

Gets the P-values of an object.

● Data Source: BioConductor
● Keywords: methods
● Alias: pvalue
● 0 images

triplex-package (Package: triplex) : Triplex search and visualization package

This package provides functions for the identification and visualization of potential intramolecular triplex (H-DNA) patterns in DNA sequences.

● Data Source: BioConductor
● Keywords: package
● Alias: triplex, triplex-package
● 1 images

triplex.3D (Package: triplex) :

This function visualizes a TriplexViews object as a 3D model. Its structure can be drawn with automatic optimalizations. To use this function, please install suggested rgl package from CRAN.

● Data Source: BioConductor
● Keywords:
● Alias: triplex.3D
● 0 images

triplex.alignment (Package: triplex) :

This function computes best triplex alignment.

● Data Source: BioConductor
● Keywords:
● Alias: triplex.alignment
● 0 images

triplex.diagram (Package: triplex) :

This function visualizes a TriplexViews object as a 2D diagram. Nucleotides are drawn as characters in circles and bonds as lines between them (Watson-Crick or Hogsteen).

● Data Source: BioConductor
● Keywords:
● Alias: triplex.diagram
● 1 images