stahlLoglik
(Package: xoi) :
Calculate log likelihood for Stahl model
Calculate the log likelihood for the Stahl model for varying parameters, with data on crossover locations.
● Data Source:
CranContrib
● Keywords: models
● Alias: stahlLoglik
●
0 images
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fitGamma
(Package: xoi) :
Fit Gamma model
Fit the gamma model for crossover interference to data on crossover locations.
● Data Source:
CranContrib
● Keywords: models
● Alias: fitGamma
●
0 images
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joint.given.two
(Package: xoi) :
Crossover locations given there are two
Calculates the joint density of the crossover locations on a random meiotic product, given that there are precisely two crossovers, for the gamma model.
● Data Source:
CranContrib
● Keywords: distribution
● Alias: joint.given.two
●
0 images
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stahlcoi
(Package: xoi) :
Coincidence function for the Stahl model
Calculates the coincidence function for the Stahl model.
● Data Source:
CranContrib
● Keywords: distribution
● Alias: stahlcoi
●
0 images
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chiasma
(Package: xoi) :
Estimate chiasma distribution from crossover counts
Fit several models, with an assumption of no chromatid interference, to crossover count data to obtain fitted distributions of the number of chiasmata.
● Data Source:
CranContrib
● Keywords: models
● Alias: chiasma
●
0 images
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countxo
(Package: xoi) :
Estimate number of crossovers
Estimate the number of crossovers in each meiosis in a backcross.
● Data Source:
CranContrib
● Keywords: utilities
● Alias: countxo
●
0 images
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est.recrate
(Package: xoi) :
Estimate recombination rate
Obtain a smoothed estimate of the recombination rate along a chromosome, using the cM and Mbp position of markers.
● Data Source:
CranContrib
● Keywords: models
● Alias: est.recrate
●
0 images
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xoprob
(Package: xoi) :
Distribution of number of crossovers
Calculates the probability of 0, 1, 2, or >2 crossovers for a chromosome of a given length, for the gamma model.
● Data Source:
CranContrib
● Keywords: distribution
● Alias: xoprob
●
0 images
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distance.given.two
(Package: xoi) :
Distance between crossovers given there are two
Calculates the density of the distance between the crossovers on a meiotic product, given that there are precisely two crossovers, for the gamma model.
● Data Source:
CranContrib
● Keywords: distribution
● Alias: distance.given.two
●
0 images
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est.coi.um
(Package: xoi) :
Estimate the coincidence as a function of micron distance
Estimate the coincidence as a function of micron distance, with data on XO locations in microns plus SC length in microns.
● Data Source:
CranContrib
● Keywords: models
● Alias: est.coi.um
●
0 images
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