AnnotationForge

Package: AnnotationForge
Title: Code for Building Annotation Database Packages
Description: Provides code for generating Annotation packages and
their databases. Packages produced are intended to be
used with AnnotationDbi.
Version: 1.14.2
Author: Marc Carlson, Herve Pages
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
Depends: R (>= 2.7.0), methods, utils, BiocGenerics (>= 0.15.10),
Biobase (>= 1.17.0), AnnotationDbi (>= 1.33.14)
Imports: DBI, RSQLite, XML, S4Vectors
Suggests: RCurl, biomaRt, httr, GenomeInfoDb, affy, hgu95av2.db,
human.db0, org.Hs.eg.db, Homo.sapiens, hom.Hs.inp.db, GO.db,
RSQLite, XML, BiocStyle, knitr
Collate: AnnDbPkg-maker.R sqlForge_utils.R sqlForge_baseMapBuilder.R
sqlForge_schemaGen.R sqlForge_tableBuilder.R
sqlForge_makeAnnPkgs.R sqlForge_wrapBaseDBPkgs.R
sqlForge_seqnames.R makeProbePackage.R
makeOrgPackageFromDataFrames.R makeChipPackageFromDataFrames.R
NCBI_ftp.R NCBI_getters.R makeInparanoidDbs.R
test_AnnotationForge_package.R
License: Artistic-2.0
biocViews: Annotation, Infrastructure
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-05-16 03:29:57 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'AnnotationForge' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'AnnotationForge'
    finding HTML links ... done
    AnnDbPkg-maker                          html  
    finding level-2 HTML links ... done

    available.db0pkgs                       html  
    generateSeqnames_db                     html  
    getProbeDataAffy                        html  
    getProbeData_1lq                        html  
    makeChipPackageFromDataFrames           html  
    makeInpDb                               html  
    makeOrgPackage                          html  
    makeOrgPackageFromDataFrames            html  
    makeProbePackage                        html  
    sqlForge-makeCHIPDB                     html  
    sqlForge-popDB                          html  
    sqlForge-wrapDBPackages                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (AnnotationForge)
Making 'packages.html' ... done