BVS

Package: BVS
Type: Package
Title: Bayesian Variant Selection: Bayesian Model Uncertainty
Techniques for Genetic Association Studies
Author: Melanie Quintana <maw27.wilson@gmail.com>
Maintainer: Melanie Quintana <maw27.wilson@gmail.com>
Description: The functions in this package focus on analyzing
case-control association studies involving a group of genetic
variants. In particular, we are interested in modeling the
outcome variable as a function of a multivariate genetic
profile using Bayesian model uncertainty and variable selection
techniques. The package incorporates functions to analyze data
sets involving common variants as well as extensions to model
rare variants via the Bayesian Risk Index (BRI) as well as
haplotypes. Finally, the package also allows the incorporation
of external biological information to inform the marginal
inclusion probabilities via the iBMU.
Version: 4.12.1
License: Unlimited
Depends: MASS, msm, haplo.stats, R (>= 2.14.0)
Packaged: 2012-08-09 16:25:49 UTC; maw27
Repository: CRAN
Date/Publication: 2012-08-09 17:07:48

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'BVS' ...
** package 'BVS' successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'BVS'
    finding HTML links ... done
    BVS-package                             html  
    InformBVS.I.out                         html  
    InformBVS.NI.out                        html  
    InformData                              html  
    Informresults.I                         html  
    Informresults.NI                        html  
    RareBVS.out                             html  
    RareData                                html  
    RareResults                             html  
    enumerateBVS                            html  
    fitBVS                                  html  
    hapBVS                                  html  
    plotRVS                                 html  
    sampleBVS                               html  
    summaryBVS                              html  
** building package indices
** testing if installed package can be loaded
* DONE (BVS)
Making 'packages.html' ... done