CINOEDV

Package: CINOEDV
Type: Package
Title: Co-Information based N-Order Epistasis Detector and Visualizer
Version: 2.0
Date: 2014-11-26
Author: Junliang Shang
Maintainer: Junliang Shang <shangjunliang110@163.com>
Description: Detecting and visualizing nonlinear interaction effects of single nucleotide polymorphisms or epistatic interactions, especially high-order epistatic interactions, are important topics in bioinformatics because of their significant mathematical and computational challenges. We present CINOEDV (Co-Information based N-Order Epistasis Detector and Visualizer) for detecting, visualizing, and analyzing high-order epistatic interactions by introducing virtual vertices into the construction of a hypergraph. CINOEDV was developed as an alternative to existing software to build a global picture of epistatic interactions and unexpected high-order epistatic interactions, which might provide useful clues for understanding the underlying genetic architecture of complex diseases.
License: GPL-2
LazyLoad: yes
Depends: R.matlab, igraph, ggplot2, reshape2
Packaged: 2014-11-27 07:22:48 UTC; root
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-27 09:45:12

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'CINOEDV' ...
** package 'CINOEDV' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'CINOEDV'
    finding HTML links ... done
    BatCINOEDV                              html  
    CINOEDV-package                         html  
    CINOEDV_Main                            html  
    CheckVerticeType                        html  
    CoInformation                           html  
    CombinationEntropy                      html  
    ConstructCompleteGraph                  html  
    DegreeAnalysis                          html  
    Edges                                   html  
    EvaluationMeasure                       html  
    ExhaustiveSearch                        html  
    FiveEffect                              html  
    FourEffect                              html  
    HeatMapFactor                           html  
    InputData                               html  
    InstallPackage                          html  
    NetworkData                             html  
    NormalizationEffect                     html  
    NotationName                            html  
    PSOSearch                               html  
    PlotTopEffects                          html  
    SingleEffect                            html  
    SubgraphSplit                           html  
    TestMaxOrder                            html  
    TestNumberThreshold                     html  
    TestPSOParameters                       html  
    TestRatioThreshold                      html  
    TestSNPNameFile                         html  
    ThreeEffect                             html  
    TwoEffect                               html  
    Vertices                                html  
    class                                   html  
    pts                                     html  
    tic                                     html  
    toc                                     html  
** building package indices
** testing if installed package can be loaded
* DONE (CINOEDV)
Making 'packages.html' ... done