CRImage

Package: CRImage
Type: Package
Title: CRImage a package to classify cells and calculate tumour
cellularity
Version: 1.20.0
Date: 2012-10-01
Author: Henrik Failmezger <failmezger@mpipz.mpg.de>, Yinyin Yuan <Yinyin.Yuan@cancer.org.uk>, Oscar Rueda <oscar.rueda@cancer.org.uk>, Florian Markowetz <Florian.Markowetz@cancer.org.uk>
Maintainer: Henrik Failmezger <failmezger@mpipz.mpg.de>, Yinyin Yuan
<Yinyin.Yuan@cancer.org.uk>
Description: CRImage provides functionality to process and analyze images, in particular to classify cells in biological images. Furthermore, in the context of tumor images, it provides functionality to calculate tumour cellularity.
License: Artistic-2.0
LazyLoad: yes
Imports: MASS, e1071, foreach, sgeostat
Depends: EBImage, DNAcopy, aCGH
Collate: plotCorrectedCN.R correctCopyNumber.R writeDensityImage.R
convertRGBToHSV.R convertHSVToRGB.R imageCompression.R
createBinaryImage.R colorCorrection.R searchStructures.R
segmentStructures.R classifyStructures.R numberOfNeighbors.R
segmentCytoplasma.R segmentImage.R createClassifier.R
kernelSmoother.R paintCells.R classifyCells.R
determineCellularity.R calculateCellularity.R findSlices.R
parseFinalScan.R classificationAperio.R processAperio.R
Phansalkar_threshold.R SauvolaThreshold.R
calculateMeanStdTarget.R convertLABToRGB.R convertRGBToLAB.R
localORThreshold.R oregonThreshold.R localThreshold.R
calculateOtsu.R classifyPen.R getImageDistance.R hist3d.R
labelCells.R plotImage.R
biocViews: CellBiology, Classification
Packaged: 2016-05-04 03:45:46 UTC; biocbuild
NeedsCompilation: no

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'CRImage' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'CRImage'
    finding HTML links ... done
    CRImage-internal                        html  
    CRImage-package                         html  
    SauvolaThreshold                        html  
    calculateCellularity                    html  
    calculateMeanStdTarget                  html  
    calculateOtsu                           html  
    classifyCells                           html  
    colorCorrection                         html  
    convertHSVToRGB                         html  
    convertLABToRGB                         html  
    convertRGBToHSV                         html  
    convertRGBToLAB                         html  
    correctCopyNumber                       html  
    createBinaryImage                       html  
    createClassifier                        html  
    labelCells                              html  
    plotCorrectedCN                         html  
    processAperio                           html  
    segmentImage                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CRImage)
Making 'packages.html' ... done