R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Data Type

Packages
Functions
Images
Data set

Classification

Results 1 - 10 of 19 found.
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convertRGBToHSV (Package: CRImage) :

The RGB Image is converted to an HSV image.

● Data Source: BioConductor
● Keywords: ~kwd1, ~kwd2
● Alias: convertRGBToHSV
● 0 images

convertRGBToLAB (Package: CRImage) :

Conversion of Color spaces.

● Data Source: BioConductor
● Keywords: misc
● Alias: convertRGBToLAB
● 0 images

correctCopyNumber (Package: CRImage) : Allelic Copy Number correction for cellularity

This function segments copy number and corrects log-ratios (LRR) and beta allele frequencies (BAF) values for cellularity.

● Data Source: BioConductor
● Keywords: misc
● Alias: correctCopyNumber
● 0 images

createBinaryImage (Package: CRImage) : Thresholding

Creates a binary image from a grayscale image by thresholding.

● Data Source: BioConductor
● Keywords: misc
● Alias: createBinaryImage
● 0 images

createClassifier (Package: CRImage) : Construction of a classifier

Creates a classifier for a training set.

● Data Source: BioConductor
● Keywords: misc
● Alias: createClassifier
● 0 images

labelCells (Package: CRImage) :

The functions creates an interactive session in order to label cells with their classes. The labeled cells can be used as training set for the classifier. Note!! This is until now only tested for MacOsX.

● Data Source: BioConductor
● Keywords: misc
● Alias: labelCells
● 0 images

plotCorrectedCN (Package: CRImage) : Plot CN profiles corrected for cellularity

This function takes the result of a call to correctCopyNumber and plots the results.

● Data Source: BioConductor
● Keywords: misc
● Alias: plotCorrectedCN
● 1 images

processAperio (Package: CRImage) : Cellularity Calculation of Aperio TX Scanner

Procession of Aperio TX Slides.

● Data Source: BioConductor
● Keywords: misc
● Alias: processAperio
● 0 images

segmentImage (Package: CRImage) : Segmentation of an image

The function segments cells or cell nuclei in the image.

● Data Source: BioConductor
● Keywords: misc
● Alias: segmentImage
● 0 images

CRImage-internal (Package: CRImage) : Internal CRImage Functions

Internal CRImage functions

● Data Source: BioConductor
● Keywords: internal
● Alias: Phansalkar_threshold, classificationAperio, classifyStructures, determineCellularity, findSlices, getCorrected, imageCompression, kernelSmoother, localORThreshold, localOtsuThreshold, numberOfNeighbors, paintCells, parseFinalScan, plotImages, searchStructures, segmentCytoplasma, segmentStructures, writeDensityImage
● 0 images