Category

Package: Category
Title: Category Analysis
Version: 2.38.0
Author: R. Gentleman with contributions from S. Falcon and D.Sarkar
Description: A collection of tools for performing category analysis.
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
License: Artistic-2.0
Depends: methods, stats4, BiocGenerics, AnnotationDbi, Biobase, Matrix
Imports: utils, stats, graph, RBGL, GSEABase, genefilter, annotate,
RSQLite
Suggests: EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6),
hgu95av2.db, KEGG.db, SNPchip, geneplotter, limma, lattice,
RUnit, org.Sc.sgd.db, GOstats, GO.db
LazyLoad: Yes
Collate: AllClasses.R AllGenerics.R categoryToEntrezBuilder-methods.R
categoryName-methods.R hyperg-methods.R hyperGTest-methods.R
linearMTest-methods.R DatPkg-accessors.R ChrBandTree.R
tree_visitor.R cb_test.R initialize-methods.R
HyperGParams-accessors.R LinearMParams-accessors.R
HyperGResult-accessors.R LinearMResult-accessors.R
ChrMapHyperGResult-accessors.R ChrMapLinearMResult-accessors.R
show-methods.R universeBuilder-methods.R utils.R MAPcode.R
catcode.R cateGOryMatrix.R gseaperm.R summary-methods.R mouse.R
biocViews: Annotation, GO, Pathways, GeneSetEnrichment
NeedsCompilation: no
Packaged: 2016-05-04 02:46:16 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Category' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Category'
    finding HTML links ... done
    Category-defunct                        html  
    ChrBandTree-class                       html  
    ChrMapHyperGParams-class                html  
    ChrMapHyperGResult-class                html  
    ChrMapLinearMParams-class               html  
    ChrMapLinearMResult-class               html  
    DatPkg-class                            html  
    GOHyperGParams-class                    html  
    GSEAGOHyperGParams                      html  
    HyperGParams-class                      html  
    HyperGResult-accessors                  html  
    HyperGResult-class                      html  
    HyperGResultBase-class                  html  
    KEGGHyperGParams-class                  html  
    LinearMParams-class                     html  
    LinearMResult-class                     html  
    LinearMResultBase-class                 html  
    MAPAmat                                 html  
    NewChrBandTree                          html  
    applyByCategory                         html  
    cateGOryMatrix                          html  
    categoryToEntrezBuilder                 html  
    cb_contingency                          html  
    cb_parse_band_Hs                        html  
    cb_parse_band_Mm                        html  
    cb_test                                 html  
    effectSize                              html  
    exampleLevels                           html  
    findAMstats                             html  
    getPathNames                            html  
    gseattperm                              html  
    hyperGTest                              html  
    hyperg                                  html  
    linearMTest                             html  
    local_test_factory                      html  
    makeChrBandGraph                        html  
    makeEBcontr                             html  
    makeValidParams                         html  
    probes2MAP                              html  
    probes2Path                             html  
    tree_visitor                            html  
    ttperm                                  html  
    universeBuilder                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Category)
Making 'packages.html' ... done