R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 3 of 3 found.
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PCpheno : Phenotypes and cellular organizational units

Package: PCpheno
Type: Package
Title: Phenotypes and cellular organizational units
Version: 1.34.0
Author: Nolwenn Le Meur and Robert Gentleman
Description: Tools to integrate, annotate, and link phenotypes to
cellular organizational units such as protein complexes and
pathways.
Depends: R (>= 2.10), Category, ScISI (>= 1.3.0), SLGI, ppiStats,
ppiData, annotate (>= 1.17.4)
Imports: AnnotationDbi, Biobase, Category, GO.db, graph, graphics,
GSEABase, KEGG.db, methods, ScISI, stats, stats4
Suggests: KEGG.db, GO.db, org.Sc.sgd.db
Maintainer: Nolwenn Le Meur <nlemeur@gmail.com>
License: Artistic-2.0
biocViews: GraphAndNetwork, Proteomics, Network
NeedsCompilation: no
Packaged: 2016-05-04 03:05:41 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: GraphAndNetwork, Network, Proteomics
● 3 images, 19 functions, 8 datasets
● Reverse Depends: 0

meshr : Tools for conducting enrichment analysis of MeSH

Package: meshr
Title: Tools for conducting enrichment analysis of MeSH
Description: A set of annotation maps describing the entire MeSH assembled using data from MeSH
Version: 1.8.0
Author: Itoshi Nikaido, Koki Tsuyuzaki, Gota Morota
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
Depends: R (>= 3.0.1), fdrtool, Category, BiocGenerics, methods,
cummeRbund, org.Hs.eg.db, MeSH.db, MeSH.AOR.db, MeSH.PCR.db,
MeSHDbi, MeSH.Hsa.eg.db, MeSH.Aca.eg.db, MeSH.Bsu.168.eg.db,
MeSH.Syn.eg.db, S4Vectors
License: Artistic-2.0
biocViews: AnnotationData, FunctionalAnnotation, Bioinformatics,
Statistics, Annotation, MultipleComparisons, MeSHDb
Packaged: 2016-05-04 05:27:42 UTC; biocbuild
NeedsCompilation: no

● Data Source: BioConductor
● BiocViews: Annotation, AnnotationData, Bioinformatics, FunctionalAnnotation, MeSHDb, MultipleComparisons, Statistics
● 0 images, 6 functions, 3 datasets
● Reverse Depends: 0

GOstats : Tools for manipulating GO and microarrays.

Package: GOstats
Title: Tools for manipulating GO and microarrays.
Version: 2.38.1
Author: R. Gentleman and S. Falcon
Description: A set of tools for interacting with GO and microarray
data. A variety of basic manipulation tools for graphs,
hypothesis testing and other simple calculations.
Depends: R (>= 2.10), Biobase (>= 1.15.29), Category (>= 2.3.26), graph
Imports: methods, stats, stats4, AnnotationDbi (>= 0.0.89), Biobase (>=
1.15.29), Category (>= 2.3.26), GO.db (>= 1.13.0), RBGL,
annotate (>= 1.13.2), graph (>= 1.15.15), AnnotationForge
Suggests: hgu95av2.db (>= 1.13.0), ALL, GO.db (>= 1.13.0), annotate,
multtest, genefilter, RColorBrewer, Rgraphviz, xtable, SparseM,
GSEABase, geneplotter, org.Hs.eg.db, RUnit, BiocGenerics
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
License: Artistic-2.0
Collate: zzz.R AllClasses.R AllGenerics.R hyperGTest-methods.R
GOHyperGResult-accessors.R GOgraph.R GOhyptest.R hyperGtable.R
shortestPath.R triad.R
biocViews: Annotation, GO, MultipleComparison, GeneExpression,
Microarray, Pathways, GeneSetEnrichment, GraphAndNetwork
NeedsCompilation: no
Packaged: 2016-06-24 01:37:18 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: Annotation, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Microarray, MultipleComparison, Pathways
● 1 images, 15 functions, 1 datasets
● Reverse Depends: 2