CopyNumber450k

Package: CopyNumber450k
Title: R package for calling CNV from Illumina 450k methylation
microarrays
Version: 1.8.0
Date: 2014-02-04
Author: Simon Papillon-Cavanagh, Jean-Philippe Fortin, Nicolas De Jay
Maintainer: Simon Papillon-Cavanagh
<simon.papillon-cavanagh@mail.mcgill.ca>
Description: This package contains a set of functions that allow CNV
calling from Illumina 450k methylation microarrays.
License: Artistic-2.0
Imports: methods
Depends: Biobase, minfi, DNAcopy, preprocessCore, BiocGenerics
Suggests: CopyNumber450kData, minfiData
LinkingTo:
LazyData: yes
Collate: AllClasses.R AllGenerics.R CNV450kSet-accessors.R
CNV450kSet-actions.R CNV450kSet-comparison.R
CNV450kSet-initialize.R CNV450kSet-plot.R extract.R
normalization.functional.R normalization.quantile.R
biocViews: DNAMethylation, Microarray, Preprocessing, QualityControl,
CopyNumberVariation
NeedsCompilation: no
Packaged: 2016-05-04 05:20:08 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'CopyNumber450k' ...
** R
** inst
** preparing package for lazy loading
Creating a new generic function for 'plotSample' in package 'CopyNumber450k'
Creating a new generic function for 'plotPCA' in package 'CopyNumber450k'
Creating a generic function for 'write.csv' from package 'utils' in package 'CopyNumber450k'
** help
*** installing help indices
  converting help for package 'CopyNumber450k'
    finding HTML links ... done
    CNV450kSet                              html  
    finding level-2 HTML links ... done

** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: multiple methods tables found for 'plotPCA'
* DONE (CopyNumber450k)
Making 'packages.html' ... done