Epi

Package: Epi
Version: 2.0
Date: 2016-01-06
Title: A Package for Statistical Analysis in Epidemiology
Authors@R: c(person("Bendix", "Carstensen", role = c("aut", "cre"),
email = "bxc@steno.dk"),
person("Martyn", "Plummer", role = "aut",
email = "plummerm@iarc.fr"),
person("Esa", "Laara", role = "ctb"),
person("Michael", "Hills", role = "ctb"))
Depends: R (>= 3.0.0), utils
Imports: cmprsk, etm, splines, MASS, survival, plyr
Suggests: mstate, nlme, lme4
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data, in
particular representation, manipulation and simulation of multistate
data - the Lexis suite of functions, which includes interfaces to
mstate, etm and cmprsk packages.
Also contains functions for Age-Period-Cohort modeling and a
function for interval censored data and some useful functions for
tabulation and plotting, as well some epidemiological datasets.
License: GPL-2
URL: http://BendixCarstensen.com/Epi/
NeedsCompilation: yes
Packaged: 2016-01-06 18:15:40 UTC; bendix
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <bxc@steno.dk>
Repository: CRAN
Date/Publication: 2016-01-06 20:29:29

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Epi' ...
** package 'Epi' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c chinv2.c -o chinv2.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c cholesky2.c -o cholesky2.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c chsolve2.c -o chsolve2.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c clogit.c -o clogit.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o Epi.so chinv2.o cholesky2.o chsolve2.o clogit.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/Epi/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Epi'
    finding HTML links ... done
    B.dk                                    html  
    DMconv                                  html  
    DMlate                                  html  
    Icens                                   html  
    Lexis                                   html  
    Lexis.diagram                           html  
    Lexis.lines                             html  
    Life.lines                              html  
    M.dk                                    html  
    N.dk                                    html  
    N2Y                                     html  
    NArray                                  html  
    Ns                                      html  
    ROC                                     html  
    Relevel                                 html  
    S.typh                                  html  
    Termplot                                html  
    Y.dk                                    html  
    apc.fit                                 html  
    apc.frame                               html  
    bdendo                                  html  
    bdendo11                                html  
    births                                  html  
    blcaIT                                  html  
    boxes.MS                                html  
    brv                                     html  
    cal.yr                                  html  
    ccwc                                    html  
    ci.cum                                  html  
    ci.lin                                  html  
    ci.pd                                   html  
    clogistic                               html  
    contr.cum                               html  
    crr.Lexis                               html  
    cutLexis                                html  
    detrend                                 html  
    diet                                    html  
    effx                                    html  
    effx.match                              html  
    ewrates                                 html  
    expand.data                             html  
    fit.add                                 html  
    fit.baseline                            html  
    fit.mult                                html  
    float                                   html  
    foreign.Lexis                           html  
    ftrend                                  html  
    gen.exp                                 html  
    gmortDK                                 html  
    hivDK                                   html  
    lep                                     html  
    lines.apc                               html  
    lls                                     html  
    lungDK                                  html  
    merge.Lexis                             html  
    merge.data.frame                        html  
    mh                                      html  
    mortDK                                  html  
    ncut                                    html  
    nice                                    html  
    nickel                                  html  
    occup                                   html  
    pc.lines                                html  
    pctab                                   html  
    plot.Lexis                              html  
    plot.apc                                html  
    plotEst                                 html  
    plotevent                               html  
    projection.ip                           html  
    rateplot                                html  
    rbind.Lexis                             html  
    simLexis                                html  
    splitLexis                              html  
    stack.Lexis                             html  
    start.Lexis                             html  
    stattable                               html  
    stattable.funs                          html  
    subset.Lexis                            html  
    summary.Lexis                           html  
    testisDK                                html  
    thoro                                   html  
    time.band                               html  
    time.scales                             html  
    transform.Lexis                         html  
    twoby2                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Epi)
Making 'packages.html' ... done