FSA

Package: FSA
Title: Simple Fisheries Stock Assessment Methods
Version: 0.8.7
Date: 2016-5-7
Description: A variety of simple fish stock assessment methods.
Detailed vignettes are available on the fishR website <http://derekogle.com/fishR/>.
Authors@R: person("Derek","Ogle",email="derek@derekogle.com",role=c("aut","cre"))
URL: https://github.com/droglenc/FSA
BugReports: https://github.com/droglenc/FSA/issues
License: GPL (>= 2)
LazyData: true
Depends: R (>= 3.0.0)
Imports: graphics, grDevices, stats, tools, utils, car, dplyr, gplots,
Hmisc, plotrix, plyr, sciplot
Suggests: dunn.test, fishmethods, FSAdata, knitr, lmtest, marked,
nlstools, Rcapture, testthat, rmarkdown
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-05-07 13:57:55 UTC; dogle
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>
Repository: CRAN
Date/Publication: 2016-05-08 09:55:37

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'FSA' ...
** package 'FSA' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'FSA'
    finding HTML links ... done
    BluegillJL                              html  
    BrookTroutTH                            html  
    ChinookArg                              html  
    CodNorwegian                            html  
    CutthroatAL                             html  
    Ecoli                                   html  
    FSA-internals                           html  
    FSA                                     html  
    FSAUtils                                html  
    Mirex                                   html  
    PSDlit                                  html  
    PikeNY                                  html  
    PikeNYPartial1                          html  
    SMBassLS                                html  
    SMBassWB                                html  
Rd warning: /tmp/RtmprX26Ph/R.INSTALL79285fe1a479/FSA/man/SMBassWB.Rd:54: missing file link 'wblake2'
    Schnute                                 html  
    SpotVA1                                 html  
    Subset                                  html  
    Summarize                               html  
Rd warning: /tmp/RtmprX26Ph/R.INSTALL79285fe1a479/FSA/man/Summarize.Rd:118: missing file link 'basicStats'
    WR79                                    html  
    WSlit                                   html  
    WhitefishLC                             html  
    addRadCap                               html  
    addZeroCatch                            html  
    ageBias                                 html  
    agePrecision                            html  
    alkAgeDist                              html  
    alkIndivAge                             html  
    alkMeanVar                              html  
    alkPlot                                 html  
    bcFuns                                  html  
    binCI                                   html  
    bootCase                                html  
    capHistConvert                          html  
Rd warning: /tmp/RtmprX26Ph/R.INSTALL79285fe1a479/FSA/man/capHistConvert.Rd:54: missing file link 'Rcapture-package'
Rd warning: /tmp/RtmprX26Ph/R.INSTALL79285fe1a479/FSA/man/capHistConvert.Rd:112: missing file link 'Rcapture-package'
Rd warning: /tmp/RtmprX26Ph/R.INSTALL79285fe1a479/FSA/man/capHistConvert.Rd:299: missing file link 'Rcapture-package'
    capHistSum                              html  
    catchCurve                              html  
    chapmanRobson                           html  
    chooseColors                            html  
    col2rgbt                                html  
    compIntercepts                          html  
    compSlopes                              html  
Rd warning: /tmp/RtmprX26Ph/R.INSTALL79285fe1a479/FSA/man/compSlopes.Rd:16: missing file link 'p.adjust.methods'
Rd warning: /tmp/RtmprX26Ph/R.INSTALL79285fe1a479/FSA/man/compSlopes.Rd:55: missing file link 'p.adjust.methods'
    depletion                               html  
    dunnTest                                html  
Rd warning: /tmp/RtmprX26Ph/R.INSTALL79285fe1a479/FSA/man/dunnTest.Rd:26: missing file link 'p.adjustment.methods'
Rd warning: /tmp/RtmprX26Ph/R.INSTALL79285fe1a479/FSA/man/dunnTest.Rd:49: missing file link 'p.adjustment.methods'
    expandCounts                            html  
    expandLenFreq                           html  
    extraTests                              html  
    fact2num                                html  
    fishR                                   html  
    fitPlot                                 html  
    fsaNews                                 html  
    gConvert                                html  
    geomean                                 html  
Rd warning: /tmp/RtmprX26Ph/R.INSTALL79285fe1a479/FSA/man/geomean.Rd:50: missing file link 'Gsd'
    growthModels                            html  
    headtail                                html  
    hist.formula                            html  
    histFromSum                             html  
    hoCoef                                  html  
    hyperCI                                 html  
    knitUtil                                html  
Rd warning: /tmp/RtmprX26Ph/R.INSTALL79285fe1a479/FSA/man/knitUtil.Rd:71: missing file link 'purl'
Rd warning: /tmp/RtmprX26Ph/R.INSTALL79285fe1a479/FSA/man/knitUtil.Rd:107: missing file link 'purl'
    ksTest                                  html  
    lagratio                                html  
    lencat                                  html  
    logbtcf                                 html  
    lwCompPreds                             html  
    mapvalues                               html  
    metaM                                   html  
    mrClosed                                html  
    mrOpen                                  html  
    nlsBoot                                 html  
Rd warning: /tmp/RtmprX26Ph/R.INSTALL79285fe1a479/FSA/man/nlsBoot.Rd:96: missing file link 'summary.nlsBoot'
    oddeven                                 html  
    perc                                    html  
    plotBinResp                             html  
    poiCI                                   html  
Rd warning: /tmp/RtmprX26Ph/R.INSTALL79285fe1a479/FSA/man/poiCI.Rd:40: missing file link 'pois.exact'
    psdAdd                                  html  
    psdCI                                   html  
    psdCalc                                 html  
    psdPlot                                 html  
    psdVal                                  html  
    rcumsum                                 html  
    removal                                 html  
    residPlot                               html  
    se                                      html  
    srStarts                                html  
    stockRecruitment                        html  
    sumTable                                html  
    tictactoe                               html  
    validn                                  html  
    vbStarts                                html  
    wrAdd                                   html  
    wsVal                                   html  
** building package indices
** testing if installed package can be loaded
* DONE (FSA)
Making 'packages.html' ... done