FunciSNP

Package: FunciSNP
Type: Package
Title: Integrating Functional Non-coding Datasets with Genetic
Association Studies to Identify Candidate Regulatory SNPs
Version: 1.14.0
Date: 2013-01-19
Author: Simon G. Coetzee <simon@simoncoetzee.com> and Houtan Noushmehr, PhD <houtan@usp.br>
Maintainer: Simon G. Coetzee <simon@simoncoetzee.com>
biocViews: Infrastructure, DataRepresentation, DataImport,
SequenceMatching, Annotation
Depends: R (>= 2.14.0), ggplot2, TxDb.Hsapiens.UCSC.hg19.knownGene,
FunciSNP.data
Imports: methods, BiocGenerics, Biobase, S4Vectors, IRanges,
GenomicRanges, Rsamtools (>= 1.6.1), rtracklayer (>= 1.14.1),
ChIPpeakAnno (>= 2.2.0), VariantAnnotation, plyr, snpStats,
ggplot2 (>= 0.9.0), reshape (>= 0.8.4), scales
Suggests: org.Hs.eg.db
Enhances: parallel
Description: FunciSNP integrates information from GWAS, 1000genomes and chromatin feature to identify functional SNP in coding or non-coding regions.
License: GPL-3
URL: http://coetzeeseq.usc.edu/publication/Coetzee_SG_et_al_2012/
LazyData: yes
NeedsCompilation: no
Packaged: 2016-05-04 04:35:13 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'FunciSNP' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'FunciSNP'
    finding HTML links ... done
    CorrelatedSNPs-class                    html  
    FunciSNP-package                        html  
    FunciSNPAnnotateSummary                 html  
    FunciSNPbed                             html  
    FunciSNPidsFromSummary                  html  
    FunciSNPplot                            html  
    FunciSNPsummaryOverlaps                 html  
    FunciSNPtable                           html  
    TSList-class                            html  
    TagSNP-class                            html  
    getFSNPs                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (FunciSNP)
Making 'packages.html' ... done