Hmisc

Package: Hmisc
Version: 3.17-4
Date: 2016-05-02
Title: Harrell Miscellaneous
Author: Frank E Harrell Jr <f.harrell@vanderbilt.edu>, with
contributions from Charles Dupont and many others.
Maintainer: Frank E Harrell Jr <f.harrell@vanderbilt.edu>
Depends: lattice, survival (>= 2.37-6), Formula, ggplot2 (>= 2.0)
Imports: methods, latticeExtra, cluster, rpart, nnet, acepack, foreign,
gtable, grid, gridExtra, data.table
Suggests: chron, rms, mice, tables, knitr, ff, ffbase, htmltools
Description: Contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, importing and annotating datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of R objects to LaTeX code,
and recoding variables.
License: GPL (>= 2)
LazyLoad: Yes
URL: http://biostat.mc.vanderbilt.edu/Hmisc
https://github.com/harrelfe/Hmisc
NeedsCompilation: yes
Packaged: 2016-05-02 14:10:51 UTC; harrelfe
Repository: CRAN
Date/Publication: 2016-05-02 17:28:19

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Hmisc' ...
** package 'Hmisc' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c Hmisc.c -o Hmisc.o
f95   -fpic  -g -O2  -c cidxcn.f -o cidxcn.o
f95   -fpic  -g -O2  -c cidxcp.f -o cidxcp.o
f95   -fpic  -g -O2  -c hoeffd.f -o hoeffd.o
f95   -fpic  -g -O2  -c jacklins.f -o jacklins.o
f95   -fpic  -g -O2  -c largrec.f -o largrec.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c mChoice.c -o mChoice.o
f95   -fpic  -g -O2  -c maxempr.f -o maxempr.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c nstr.c -o nstr.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c ranksort.c -o ranksort.o
f95   -fpic  -g -O2  -c rcorr.f -o rcorr.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c string_box.c -o string_box.o
f95   -fpic  -g -O2  -c wclosest.f -o wclosest.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o Hmisc.so Hmisc.o cidxcn.o cidxcp.o hoeffd.o jacklins.o largrec.o mChoice.o maxempr.o nstr.o ranksort.o rcorr.o string_box.o wclosest.o -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/Hmisc/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Hmisc'
    finding HTML links ... done
    Cs                                      html  
    Ecdf                                    html  
    Hmisc-internal                          html  
    Lag                                     html  
    Merge                                   html  
    Misc                                    html  
    Overview                                html  
    Save                                    html  
    abs.error.pred                          html  
    addMarginal                             html  
    all.is.numeric                          html  
    approxExtrap                            html  
    areg                                    html  
    aregImpute                              html  
    biVar                                   html  
    binconf                                 html  
    bootkm                                  html  
Rd warning: /tmp/Rtmpa8QnMp/R.INSTALL1a251bf9a50e/Hmisc/man/bootkm.Rd:61: missing file link 'Survival.cph'
Rd warning: /tmp/Rtmpa8QnMp/R.INSTALL1a251bf9a50e/Hmisc/man/bootkm.Rd:61: missing file link 'Quantile.cph'
    bpower                                  html  
    bpplot                                  html  
    bystats                                 html  
    capitalize                              html  
    ciapower                                html  
    cnvrt.coords                            html  
    consolidate                             html  
    contents                                html  
    cpower                                  html  
    csv.get                                 html  
    curveRep                                html  
    cut2                                    html  
    data.frame.create.modify.check          html  
    dataRep                                 html  
    deff                                    html  
    describe                                html  
    discrete                                html  
    dotchart2                               html  
    dotchart3                               html  
    epi                                     html  
    equalBins                               html  
    errbar                                  html  
    escapeRegex                             html  
    event.chart                             html  
    event.convert                           html  
    event.history                           html  
    ffCompress                              html  
Rd warning: /tmp/Rtmpa8QnMp/R.INSTALL1a251bf9a50e/Hmisc/man/ffCompress.Rd:52: missing file link 'cleanup.import'
    find.matches                            html  
    first.word                              html  
    format.df                               html  
    format.pval                             html  
    gbayes                                  html  
    getHdata                                html  
    getRs                                   html  
    getZip                                  html  
    ggMisc                                  html  
    hdquantile                              html  
    hist.data.frame                         html  
    histbackback                            html  
    hoeffd                                  html  
    html                                    html  
    impute                                  html  
    inc-dec                                 html  
    knitrSet                                html  
    labcurve                                html  
    label                                   html  
    latex                                   html  
    latexDotchart                           html  
    latexTabular                            html  
    latexTherm                              html  
    legendfunctions                         html  
    list.tree                               html  
    mApply                                  html  
    mChoice                                 html  
    makeNstr                                html  
    mdb.get                                 html  
    mgp.axis                                html  
    minor.tick                              html  
    mtitle                                  html  
    multLines                               html  
    na.delete                               html  
    na.detail.response                      html  
    na.keep                                 html  
    nin                                     html  
    nobsY                                   html  
    nstr                                    html  
    num.intercepts                          html  
    panel.bpplot                            html  
    partition                               html  
    pc1                                     html  
    plotCorrPrecision                       html  
    plsmo                                   html  
    popower                                 html  
    print.char.list                         html  
    print.char.matrix                       html  
    prnz                                    html  
    prselect                                html  
    pstamp                                  html  
    rMultinom                               html  
    rcorr                                   html  
    rcorr.cens                              html  
    rcorrp.cens                             html  
    rcspline.eval                           html  
Rd warning: /tmp/Rtmpa8QnMp/R.INSTALL1a251bf9a50e/Hmisc/man/rcspline.eval.Rd:92: missing file link 'rcs'
    rcspline.plot                           html  
    rcspline.restate                        html  
Rd warning: /tmp/Rtmpa8QnMp/R.INSTALL1a251bf9a50e/Hmisc/man/rcspline.restate.Rd:105: missing file link 'rcs'
    reShape                                 html  
    redun                                   html  
    rlegend                                 html  
    rm.boot                                 html  
    samplesize.bin                          html  
    sasxport.get                            html  
    scat1d                                  html  
    score.binary                            html  
    sedit                                   html  
    show.pch                                html  
    showPsfrag                              html  
    simplifyDims                            html  
    smean.sd                                html  
    solvet                                  html  
    somers2                                 html  
    spower                                  html  
    spss.get                                html  
    src                                     html  
    stat_plsmo                              html  
    stata.get                               html  
    string.bounding.box                     html  
    string.break.line                       html  
    stringDims                              html  
    subplot                                 html  
    summarize                               html  
    summary.formula                         html  
    summaryM                                html  
    summaryP                                html  
    summaryRc                               html  
    summaryS                                html  
Rd warning: /tmp/Rtmpa8QnMp/R.INSTALL1a251bf9a50e/Hmisc/man/summaryS.Rd:21: missing file link 'dotplot'
    symbol.freq                             html  
    sys                                     html  
    t.test.cluster                          html  
    tabulr                                  html  
    tex                                     html  
    transace                                html  
    transcan                                html  
Rd warning: /tmp/Rtmpa8QnMp/R.INSTALL1a251bf9a50e/Hmisc/man/transcan.Rd:261: missing file link 'lm.fit'
Rd warning: /tmp/Rtmpa8QnMp/R.INSTALL1a251bf9a50e/Hmisc/man/transcan.Rd:810: missing file link 'rcs'
    translate                               html  
    trunc.POSIXt                            html  
    units                                   html  
    upData                                  html  
    upFirst                                 html  
    valueTags                               html  
    varclus                                 html  
    wtd.stats                               html  
    xYplot                                  html  
    xtfrm.labelled                          html  
    xy.group                                html  
    yearDays                                html  
    ynbind                                  html  
    sas.get                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (Hmisc)
Making 'packages.html' ... done