IVAS

Package: IVAS
Type: Package
Title: Identification of genetic Variants affecting Alternative
Splicing
Version: 1.4.0
Author: Seonggyun Han, Sangsoo Kim
Maintainer: Seonggyun Han <hangost@ssu.ac.kr>
Description: Identification of genetic variants affecting alternative splicing.
License: GPL-2
Depends: R (> 3.0.0), GenomicFeatures
Imports: doParallel, lme4, Matrix, BiocGenerics, GenomicRanges,
IRanges, foreach, AnnotationDbi, S4Vectors, GenomeInfoDb
Suggests: BiocStyle
biocViews: AlternativeSplicing, DifferentialExpression,
DifferentialSplicing, GeneExpression, GeneRegulation,
Regression, RNASeq, Sequencing, SNP, Software, Transcription
NeedsCompilation: no
Packaged: 2016-05-04 06:04:40 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'IVAS' ...
** R
** data
** inst
** preparing package for lazy loading
No methods found in "BiocGenerics" for requests: unlist
** help
*** installing help indices
  converting help for package 'IVAS'
    finding HTML links ... done
    IVAS-package                            html  
    MsqtlFinder                             html  
Rd warning: /tmp/Rtmpesdu9T/R.INSTALL68fc67261742/IVAS/man/MsqtlFinder.Rd:53: missing file link 'GRanges'
    calSignificant                          html  
Rd warning: /tmp/Rtmpesdu9T/R.INSTALL68fc67261742/IVAS/man/calSignificant.Rd:61: missing file link 'findOverlaps'
    chrseparate                             html  
Rd warning: /tmp/Rtmpesdu9T/R.INSTALL68fc67261742/IVAS/man/chrseparate.Rd:31: missing file link 'isActiveSeq'
    findAlternative                         html  
Rd warning: /tmp/Rtmpesdu9T/R.INSTALL68fc67261742/IVAS/man/findAlternative.Rd:44: missing file link 'GRanges'
Rd warning: /tmp/Rtmpesdu9T/R.INSTALL68fc67261742/IVAS/man/findAlternative.Rd:45: missing file link 'IRanges'
    findOversnp                             html  
Rd warning: /tmp/Rtmpesdu9T/R.INSTALL68fc67261742/IVAS/man/findOversnp.Rd:29: missing file link 'findOverlaps'
    sampleexp                               html  
    samplesnp                               html  
    samplesnplocus                          html  
    saveBplot                               html  
    sqtlfinder                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in "BiocGenerics" for requests: unlist
* DONE (IVAS)
Making 'packages.html' ... done