JAGUAR

Package: JAGUAR
Type: Package
Title: Joint Analysis of Genotype and Group-Specific Variability Using
a Novel Score Test Approach to Map Expression Quantitative
Trait Loci (eQTL)
Version: 3.0.0
Date: 2015-09-15
Author: Chaitanya R. Acharya and Andrew S. Allen
Maintainer: Chaitanya Acharya <c.acharya@duke.edu>
Depends: R (>= 3.0.0), Rcpp, plyr, lme4, reshape2
LinkingTo: RcppArmadillo, Rcpp, RcppProgress
NeedsCompilation: yes
Description: Implements a novel score test that measures 1) the overall shift in the gene expression due to genotype (additive genetic effect), and 2) group-specific changes in gene expression due to genotype (interaction effect) in a mixed-effects model framework.
License: GPL-2
URL: https://groups.google.com/d/forum/jaguar-r-package
Packaged: 2015-09-23 16:27:07 UTC; ca31
Repository: CRAN
Date/Publication: 2015-09-24 11:47:57

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'JAGUAR' ...
** package 'JAGUAR' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppProgress/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppProgress/include"   -fpic  -g -O2  -c jaguar.cpp -o jaguar.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o JAGUAR.so RcppExports.o jaguar.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/JAGUAR/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'JAGUAR'
    finding HTML links ... done
    GENEapply                               html  
    JAGUAR-package                          html  
    cis_eqtl                                html  
    jagSIM                                  html  
    jag_fun                                 html  
    jaguar_cis                              html  
    jaguar_example                          html  
    jaguar_gwa                              html  
    jaguar_plotqtl                          html  
    jaguar_process                          html  
    jaguar_sim                              html  
    jaguar_slice                            html  
    rowsumscpp                              html  
    vcSIM                                   html  
** building package indices
** testing if installed package can be loaded
* DONE (JAGUAR)
Making 'packages.html' ... done