LOGICOIL

Package: LOGICOIL
Type: Package
Version: 0.99.0
Date: 2014-04-12
Title: LOGICOIL: multi-state prediction of coiled-coil oligomeric
state.
Author: Thomas L. Vincent <tlfvincent@gmail.com>, Peter J. Green and Derek N. Woolfson <D.N.Woolfson@bristol.ac.uk>
Maintainer: Thomas L. Vincent <tlfvincent@gmail.com>
Depends: R (>= 2.12), nnet
LazyData: true
ZipData: no
License: GPL (>= 2)
Description: This package contains the functions necessary to run the LOGICOIL algorithm. LOGICOIL can be used to differentiate between antiparallel dimers, parallel dimers, trimers and higher-order coiled-coil sequence. By covering >90 percent of the known coiled-coil structures, LOGICOIL is a net improvement compared with other existing methods, which achieve a predictive coverage of around 31 percent of this population. As such, LOGICOIL is particularly useful for researchers looking to characterize novel coiled-coil sequences or studying coiled-coil containing protein assemblies. It may also be used to assist in the structural characterization of synthetic coiled-coil sequences.
Repository: CRAN
URL: http://coiledcoils.chm.bris.ac.uk/LOGICOIL
Packaged: 2014-04-13 21:36:51 UTC; ThomasVincent
NeedsCompilation: no
Date/Publication: 2014-04-14 00:04:00

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'LOGICOIL' ...
** package 'LOGICOIL' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'LOGICOIL'
    finding HTML links ... done
    EstimateProbability                     html  
    LOGICOIL-package                        html  
    LOGICOIL                                html  
    LOGICOILfit                             html  
    Model_Parameters                        html  
    plot_LOGICOIL                           html  
    pssm                                    html  
** building package indices
** testing if installed package can be loaded
* DONE (LOGICOIL)
Making 'packages.html' ... done