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Last data update: 2014.03.03
MALDIquant

Package: MALDIquant
Version: 1.15
Date: 2016-06-25
Title: Quantitative Analysis of Mass Spectrometry Data
Authors@R: c(person("Sebastian", "Gibb", role=c("aut", "cre"),
email="mail@sebastiangibb.de"), person("Korbinian", "Strimmer",
role="ths"))
Depends: R (>= 3.2.0), methods
Imports: parallel
Suggests: knitr, testthat (>= 0.8)
Description: A complete analysis pipeline for matrix-assisted laser
desorption/ionization-time-of-flight (MALDI-TOF) and other
two-dimensional mass spectrometry data. In addition to commonly
used plotting and processing methods it includes distinctive
features, namely baseline subtraction methods such as
morphological filters (TopHat) or the statistics-sensitive
non-linear iterative peak-clipping algorithm (SNIP), peak
alignment using warping functions, handling of replicated
measurements as well as allowing spectra with different
resolutions.
License: GPL (>= 3)
URL: http://strimmerlab.org/software/maldiquant/
https://github.com/sgibb/MALDIquant/
BugReports: https://github.com/sgibb/MALDIquant/issues/
LazyLoad: yes
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-06-25 16:48:10 UTC; sebastian
Author: Sebastian Gibb [aut, cre],
Korbinian Strimmer [ths]
Maintainer: Sebastian Gibb <mail@sebastiangibb.de>
Repository: CRAN
Date/Publication: 2016-06-25 19:46:10
● Cran Task View: ChemPhys
● 20 images, 34 functions, 1 datasets
● Reverse Depends: 1
Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'MALDIquant' ...
** package 'MALDIquant' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c colMedians.c -o colMedians.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c init.c -o init.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c localMaxima.c -o localMaxima.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c lowerConvexHull.c -o lowerConvexHull.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c morphologicalFilters.c -o morphologicalFilters.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c snip.c -o snip.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o MALDIquant.so colMedians.o init.o localMaxima.o lowerConvexHull.o morphologicalFilters.o snip.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/MALDIquant/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'MALDIquant'
    finding HTML links ... done
    AbstractMassObject-class                html  
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    MALDIquant-defunct                      html  
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    MALDIquant-deprecated                   html  
    MALDIquant-package                      html  
    MALDIquant-parallel                     html  
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    MassPeaks-class                         html  
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    MassSpectrum-class                      html  
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    alignSpectra-functions                  html  
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    averageMassSpectra-functions            html  
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    binPeaks-functions                      html  
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    calibrateIntensity-methods              html  
    createMassPeaks-functions               html  
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    createMassSpectrum-functions            html  
    detectPeaks-methods                     html  
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    determineWarpingFunctions-functions     html  
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    estimateBaseline-methods                html  
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    estimateNoise-methods                   html  
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    fiedler2009subset                       html  
    filterPeaks-functions                   html  
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    findEmptyMassObjects-functions          html  
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    intensityMatrix-functions               html  
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    isMassObject-functions                  html  
    isMassObjectList-functions              html  
    labelPeaks-methods                      html  
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    mergeMassPeaks-functions                html  
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    monoisotopicPeaks-methods               html  
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    msiSlices-functions                     html  
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    plot-methods                            html  
    plotMsiSlice-methods                    html  
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    referencePeaks-functions                html  
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    removeBaseline-methods                  html  
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    smoothIntensity-methods                 html  
    transformIntensity-methods              html  
    trim-methods                            html  
    warp-functions                          html  
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** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MALDIquant)
Making 'packages.html' ... done