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Last data update: 2014.03.03

MALDIquantForeign

Package: MALDIquantForeign
Version: 0.10
Date: 2015-10-31
Title: Import/Export Routines for MALDIquant
Authors@R: c(person("Sebastian", "Gibb", role=c("aut", "cre"),
email="mail@sebastiangibb.de"), person("Pietro", "Franceschi",
role=c("ctb"), email="pietro.franceschi@fmach.it"))
Depends: R (>= 3.2.2), methods, MALDIquant (>= 1.11.7)
Imports: base64enc, digest, readBrukerFlexData (>= 1.7), readMzXmlData
(>= 2.7), XML
Suggests: knitr, testthat (>= 0.8), RNetCDF (>= 1.6.1)
Description: Functions for reading (tab, csv, Bruker fid, Ciphergen
XML, mzXML, mzML, imzML, Analyze 7.5, CDF, mMass MSD) and
writing (tab, csv, mMass MSD, mzML, imzML) different file
formats of mass spectrometry data into/from MALDIquant objects.
License: GPL (>= 3)
URL: http://strimmerlab.org/software/maldiquant/
https://github.com/sgibb/MALDIquantForeign/
BugReports: https://github.com/sgibb/MALDIquantForeign/issues/
LazyLoad: yes
VignetteBuilder: knitr
RoxygenNote: 5.0.0.9000
NeedsCompilation: no
Packaged: 2015-10-31 19:41:48 UTC; sebastian
Author: Sebastian Gibb [aut, cre],
Pietro Franceschi [ctb]
Maintainer: Sebastian Gibb <mail@sebastiangibb.de>
Repository: CRAN
Date/Publication: 2015-11-01 00:36:34

● 0 images, 19 functions, 0 datasets
● Reverse Depends: 0

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'MALDIquantForeign' ...
** package 'MALDIquantForeign' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'MALDIquantForeign'
    finding HTML links ... done
    MALDIquantForeign-package               html  
    MALDIquantForeign-parallel              html  
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/MALDIquantForeign-parallel.Rd:9: missing file link 'mcmapply'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/MALDIquantForeign-parallel.Rd:59: missing file link 'mcmapply'
    base64-encode                           html  
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/base64-encode.Rd:14: missing file link 'writeBin'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/base64-encode.Rd:17: missing file link 'writeBin'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/base64-encode.Rd:34: missing file link 'base64encode'
    export-methods                          html  
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/export-methods.Rd:41: missing file link 'exportTab'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/export-methods.Rd:42: missing file link 'exportCsv'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/export-methods.Rd:43: missing file link 'exportImzMl'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/export-methods.Rd:44: missing file link 'exportMsd'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/export-methods.Rd:45: missing file link 'exportMzMl'
    exportImzMl-methods                     html  
    exportMsd-methods                       html  
    exportMzMl-methods                      html  
    exportTab-methods                       html  
    import-functions                        html  
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/import-functions.Rd:61: missing file link 'importTxt'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/import-functions.Rd:62: missing file link 'importTab'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/import-functions.Rd:63: missing file link 'importCsv'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/import-functions.Rd:64: missing file link 'importBrukerFlex'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/import-functions.Rd:65: missing file link 'importCiphergenXml'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/import-functions.Rd:66: missing file link 'importMzXml'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/import-functions.Rd:67: missing file link 'importMzMl'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/import-functions.Rd:68: missing file link 'importImzMl'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/import-functions.Rd:69: missing file link 'importAnalyze'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/import-functions.Rd:70: missing file link 'importCdf'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/import-functions.Rd:71: missing file link 'importMsd'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/import-functions.Rd:77: missing file link 'import'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/import-functions.Rd:84: missing file link 'regexp'
    importAnalyze-functions                 html  
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/importAnalyze-functions.Rd:14: missing file link 'import'
    importBrukerFlex-functions              html  
    importCdf-functions                     html  
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/importCdf-functions.Rd:14: missing file link 'import'
    importCiphergenXml-functions            html  
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/importCiphergenXml-functions.Rd:14: missing file link 'import'
    importImzMl-functions                   html  
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/importImzMl-functions.Rd:18: missing file link 'import'
    importMsd-functions                     html  
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/importMsd-functions.Rd:14: missing file link 'import'
    importMzMl-functions                    html  
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/importMzMl-functions.Rd:14: missing file link 'import'
    importMzXml-functions                   html  
    importTab-functions                     html  
    supportedFileFormats-functions          html  
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:21: missing file link 'importTxt'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:22: missing file link 'importTab'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:23: missing file link 'importCsv'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:24: missing file link 'importBrukerFlex'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:25: missing file link 'importCiphergenXml'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:26: missing file link 'importMzXml'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:27: missing file link 'importMzMl'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:28: missing file link 'importImzMl'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:29: missing file link 'importAnalyze'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:30: missing file link 'importCdf'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:31: missing file link 'importMsd'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:38: missing file link 'exportTab'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:39: missing file link 'exportCsv'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:40: missing file link 'exportImzMl'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:41: missing file link 'exportMsd'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:42: missing file link 'exportMzMl'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:59: missing file link 'export'
Rd warning: /tmp/RtmplqJZJe/R.INSTALL526d7cae550d/MALDIquantForeign/man/supportedFileFormats-functions.Rd:60: missing file link 'import'
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MALDIquantForeign)
Making 'packages.html' ... done