Oscope

Package: Oscope
Type: Package
Title: Oscope - A statistical pipeline for identifying oscillatory
genes in unsynchronized single cell RNA-seq
Version: 1.2.0
Date: 2015-7-28
Author: Ning Leng
Maintainer: Ning Leng <lengning1@gmail.com>
Depends: EBSeq, cluster, testthat, BiocParallel
Suggests: BiocStyle
Description: Oscope is a statistical pipeline developed to identifying
and recovering the base cycle profiles of oscillating genes in
an unsynchronized single cell RNA-seq experiment. The Oscope
pipeline includes three modules: a sine model module to search
for candidate oscillator pairs; a K-medoids clustering module
to cluster candidate oscillators into groups; and an extended
nearest insertion module to recover the base cycle order for
each oscillator group.
License: Artistic-2.0
Collate: 'AbsCor.R' 'NormForSine.R' 'SineFun.R' 'FormatSineOut.R'
'Opt2Shift.R' 'SineOptim.R' 'PipeR.R' 'ImpShift.R'
'PipeShiftCDF.R' 'scanK.R' 'NISFun.R' 'CalcMV.R' 'OscopeKM.R'
'OscopeENI.R' 'OscopeSine.R' 'FlagCluster.R' 'PermuCut.R'
BuildVignettes: yes
biocViews: StatisticalMethod,RNASeq, Sequencing, GeneExpression
NeedsCompilation: no
Packaged: 2016-05-04 06:27:29 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Oscope' ...
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Oscope'
    finding HTML links ... done
    AbsCor                                  html  
    CalcMV                                  html  
    FlagCluster                             html  
    FormatSineOut                           html  
    ImpShift                                html  
    NISFun                                  html  
    NormForSine                             html  
    Opt2Shift                               html  
    Oscope-package                          html  
    OscopeENI                               html  
    OscopeExampleData                       html  
    OscopeKM                                html  
    OscopeSine                              html  
    PermuCut                                html  
    PipeR                                   html  
    PipeShiftCDF                            html  
    SineFun                                 html  
    SineOptim                               html  
    scanK                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Oscope)
Making 'packages.html' ... done