AbsCor
(Package: Oscope) :
Calculate absolute correlations among gene pairs
Calculate absolute correlations among gene pairs
● Data Source:
BioConductor
● Keywords:
● Alias: AbsCor
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0 images
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CalcMV
(Package: Oscope) :
Calculate estimated mean and variance of RNA-Seq data
Calculate estimated mean and variance of RNA-Seq data
● Data Source:
BioConductor
● Keywords:
● Alias: CalcMV
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1 images
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FlagCluster
(Package: Oscope) :
Flag gene clusters with small within-cluster phase differences and/or small within-cluster sine scores
Flag gene clusters with small within-cluster phase differences and/or small within-cluster sine scores
● Data Source:
BioConductor
● Keywords:
● Alias: FlagCluster
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0 images
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FormatSineOut
(Package: Oscope) :
Format SinFun outputs from lists to matrix
Format SinFun outputs from lists to matrix
● Data Source:
BioConductor
● Keywords:
● Alias: FormatSineOut
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0 images
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ImpShift
(Package: Oscope) :
Search for the optimal sample order by using the Extended Nearest Insertion
Search for the optimal sample order by using the Extended Nearest Insertion
● Data Source:
BioConductor
● Keywords:
● Alias: ImpShift
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0 images
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NISFun
(Package: Oscope) :
Run Extended Nearest Insertion and 2-opt on a gene cluster identified by OscopeKM function
Run Extended Nearest Insertion and 2-opt on a gene cluster identified by OscopeKM function
● Data Source:
BioConductor
● Keywords:
● Alias: NISFun
●
0 images
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NormForSine
(Package: Oscope) :
Rescale the gene/isoform expression matrix
Rescale the gene/isoform expression matrix
● Data Source:
BioConductor
● Keywords:
● Alias: NormForSine
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0 images
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Opt2Shift
(Package: Oscope) :
Run the 2-opt algorithm to improve the optimal order searching of the Extended Nearest Insertion
Run the 2-opt algorithm to improve the optimal order searching of the Extended Nearest Insertion
● Data Source:
BioConductor
● Keywords:
● Alias: Opt2Shift
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0 images
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Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.
● Data Source:
BioConductor
● Keywords: package
● Alias: Oscope, Oscope-package
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0 images
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OscopeENI
(Package: Oscope) :
Search for the optimal sample order for different gene clusters
Search for the optimal sample order for different gene clusters
● Data Source:
BioConductor
● Keywords:
● Alias: OscopeENI
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0 images
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