PICS

Package: PICS
Type: Package
Title: Probabilistic inference of ChIP-seq
Version: 2.16.0
Author: Xuekui Zhang <xzhang@stat.ubc.ca>, Raphael Gottardo
<rgottard@fhcrc.org>
Maintainer: Renan Sauteraud <rsautera@fhcrc.org>
Depends: R (>= 2.14.0), BiocGenerics (>= 0.1.3)
Imports: methods, stats4, IRanges, GenomicRanges, graphics, grDevices,
stats, Rsamtools, GenomicAlignments, S4Vectors
Suggests: ShortRead, rtracklayer, parallel
Description: Probabilistic inference of ChIP-Seq using an empirical
Bayes mixture model approach.
License: Artistic-2.0
Packaged: 2016-05-04 03:34:29 UTC; biocbuild
biocViews: Clustering, Visualization, Sequencing, ChIPSeq
NeedsCompilation: yes

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'PICS' ...
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c pics.c -o pics.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c segment.c -o segment.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o PICS.so pics.o segment.o -lgsl -lgslcblas -lm -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/PICS/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'PICS'
    finding HTML links ... done
    PICS                                    html  
    SegReadsList                            html  
    bam2gr                                  html  
    makeRangedDataOutput                    html  
    pics-class                              html  
    picsError-class                         html  
    picsFDR                                 html  
    picsList-class                          html  
    plot-FDR                                html  
    segChrRead                              html  
    segReads                                html  
    segReadsListPE                          html  
    segReadsPE                              html  
    segmentPICS                             html  
    setParaEM                               html  
    setParaPrior                            html  
    show                                    html  
    summary                                 html  
    summarySeg                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (PICS)
Making 'packages.html' ... done