Last data update: 2014.03.03
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PhenStat
Package: PhenStat
Type: Package
Title: Statistical analysis of phenotypic data
Version: 2.6.0
Date: 2016-04-27
Author: Natalja Kurbatova, Natasha Karp, Jeremy Mason
Maintainer: Natasha Karp <nk3@sanger.ac.uk>
Depends: R (>= 2.3.0)
Imports: methods, car, nlme, nortest, MASS, logistf
Suggests: RUnit, BiocGenerics
Description: Package contains methods for statistical analysis of phenotypic data.
License: file LICENSE
NeedsCompilation: no
Packaged: 2016-05-04 05:14:51 UTC; biocbuild
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'PhenStat' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'PhenStat'
finding HTML links ... done
FisherExactTest html
JSONOutput html
LRDataset html
LargeDataObject-class html
PhenList-class html
PhenList html
PhenTestResult-class html
PhenTestResult html
RRTest html
TFDataset html
analysedDataset html
analysedDatasetPhenList html
analysedSubset html
analysisResults html
batchIn html
boxplotResidualBatch html
boxplotSexGenotype html
boxplotSexGenotypeBatch html
boxplotSexGenotypeBatchAdjusted html
boxplotSexGenotypeResult html
boxplotSexGenotypeWeightBatchAdjusted html
categoricalBarplot html
checkDataset html
classificationTag html
columnChecks html
columnLevels html
comparison html
dataset html
determiningLambda html
dim html
finalLRModel html
finalModel html
finalTFModel html
formulaDeterminingLambda html
generateGraphs html
getColumn html
getColumnBatchAdjusted html
getColumnView html
getColumnWeightBatchAdjusted html
getCountMatrices html
getDataset html
getGenotypeEffect html
getMatrix html
getPercentageMatrix html
getStat html
getVariable html
getVariables html
hemiGenotype html
htest-class html
htestPhenStat-class html
matrixCount html
method html
methodText html
modelFormula html
modelFormulaLR html
multipleBatches html
noSexes html
parameters html
parserOutputSummary html
parserOutputSummaryLR html
parserOutputTFSummary html
performReverseTransformation html
performTransformation html
plotResidualPredicted html
printLROutput html
printTabStyle html
pvalue html
qqplotGenotype html
qqplotRandomEffects html
qqplotRotatedResiduals html
recommendMethod html
refGenotype html
scatterplotGenotypeWeight html
scatterplotGenotypeWeightResult html
scatterplotSexGenotypeBatch html
scatterplotSexGenotypeBatchResult html
setBatch html
setGenotype html
setMissingValue html
setSex html
setWeight html
startLRModel html
startModel html
startTFModel html
subsetText html
summaryOutput html
testDataset html
testFinalLRModel html
testFinalModel html
testGenotype html
transformation html
transformationJSON html
transformationText html
vectorOutput html
vectorOutputMatrices html
weightIn html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (PhenStat)
Making 'packages.html' ... done
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