PopGenReport

Package: PopGenReport
Type: Package
Title: A Simple Framework to Analyse Population Genetic Data
Version: 2.2.2
Date: 2016-05-9
Authors@R: c(
person("Bernd", "Gruber", email="bernd.gruber@canberra.edu.au", role=c("aut","cre")),
person("Aaron", "Adamack", email="aaron.adamack@canberra.edu.au", role="aut"))
Description: Provides beginner friendly framework to analyse population genetic
data. It uses 'knitr' to create comprehensive reports on spatial genetic data.
For detailed information how to use the package refer to the comprehensive
tutorials or visit www.popgenreport.org.
License: GPL
LazyData: true
Depends: R (>= 3.0.0), knitr, adegenet (>= 2.0.0), raster
Imports: lattice, RgoogleMaps, gap, calibrate, xtable, plyr, dismo,
reshape, ggplot2, R.utils, ade4, pegas, genetics, rgdal,
gdistance, vegan, sp, mmod, GGally, data.table, graphics,
grDevices, methods, stats, utils
VignetteBuilder: knitr
URL: https://github.com/green-striped-gecko/PopGenReport
Suggests:
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-05-11 01:37:12 UTC; s425824
Author: Bernd Gruber [aut, cre],
Aaron Adamack [aut]
Maintainer: Bernd Gruber <bernd.gruber@canberra.edu.au>
Repository: CRAN
Date/Publication: 2016-05-11 12:06:20

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'PopGenReport' ...
** package 'PopGenReport' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'PopGenReport'
    finding HTML links ... done
    PopGenReport-package                    html  
    finding level-2 HTML links ... done

    addline                                 html  
    addpoly                                 html  
    allel.rich                              html  
    allele.dist                             html  
    bilby                                   html  
    costdistances                           html  
    emigration                              html  
    fric.raster                             html  
    gd.kosman                               html  
    gd.smouse                               html  
    genleastcost                            html  
    init.popgensim                          html  
    landgen                                 html  
    landgenreport                           html  
    lgrMMRR                                 html  
    mutation                                html  
    null.all                                html  
    opt.landgen                             html  
    p2p                                     html  
    pairwise.fstb                           html  
    popgenreport                            html  
    pops2genind                             html  
    read.genetable                          html  
    reproduction                            html  
    run.popgensim                           html  
    spautocor                               html  
    wassermann                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (PopGenReport)
Making 'packages.html' ... done