RBGL

Package: RBGL
Version: 1.48.1
Title: An interface to the BOOST graph library
Author: Vince Carey <stvjc@channing.harvard.edu>, Li Long
<li.long@isb-sib.ch>, R. Gentleman
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
Depends: graph, methods
Imports: methods
Suggests: Rgraphviz, XML, RUnit, BiocGenerics
Description: A fairly extensive and comprehensive interface to the
graph algorithms contained in the BOOST library.
License: Artistic-2.0
URL: http://www.bioconductor.org
LazyLoad: yes
biocViews: GraphAndNetwork, Network
NeedsCompilation: yes
Packaged: 2016-05-17 01:29:00 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RBGL' ...
untarring boost include tree...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -I/usr/local/include    -fpic  -g -O2  -c bbc.cpp -o bbc.o
In file included from rbgl_trimmed_boost_1_49_0/boost/type_traits.hpp:22:0,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:32,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/betweenness_centrality.hpp:15,
                 from bbc.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:70:22: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename... T>
                      ^
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:150:46: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename T, typename U, typename... V>
                                              ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -I/usr/local/include    -fpic  -g -O2  -c cliques.cpp -o cliques.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -I/usr/local/include    -fpic  -g -O2  -c clusteringCoef.cpp -o clusteringCoef.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -I/usr/local/include    -fpic  -g -O2  -c dominatorTree.cpp -o dominatorTree.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -I/usr/local/include    -fpic  -g -O2  -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -I/usr/local/include    -fpic  -g -O2  -c hcs.cpp -o hcs.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -I/usr/local/include    -fpic  -g -O2  -c incrConnComp.cpp -o incrConnComp.o
In file included from rbgl_trimmed_boost_1_49_0/boost/type_traits.hpp:22:0,
                 from rbgl_trimmed_boost_1_49_0/boost/detail/numeric_traits.hpp:64,
                 from rbgl_trimmed_boost_1_49_0/boost/iterator/counting_iterator.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/incremental_components.hpp:18,
                 from incrConnComp.cpp:4:
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:70:22: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename... T>
                      ^
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:150:46: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename T, typename U, typename... V>
                                              ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -I/usr/local/include    -fpic  -g -O2  -c interfaces.cpp -o interfaces.o
In file included from rbgl_trimmed_boost_1_49_0/boost/type_traits.hpp:22:0,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/reverse_graph.hpp:13,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/transpose_graph.hpp:16,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/strong_components.hpp:262,
                 from interfaces.cpp:6:
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:70:22: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename... T>
                      ^
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:150:46: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename T, typename U, typename... V>
                                              ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -I/usr/local/include    -fpic  -g -O2  -c minST.cpp -o minST.o
In file included from rbgl_trimmed_boost_1_49_0/boost/type_traits.hpp:22:0,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:32,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/prim_minimum_spanning_tree.hpp:15,
                 from minST.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:70:22: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename... T>
                      ^
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:150:46: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename T, typename U, typename... V>
                                              ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -I/usr/local/include    -fpic  -g -O2  -c mincut.cpp -o mincut.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -I/usr/local/include    -fpic  -g -O2  -c ordering.cpp -o ordering.o
In file included from rbgl_trimmed_boost_1_49_0/boost/type_traits.hpp:22:0,
                 from rbgl_trimmed_boost_1_49_0/boost/detail/numeric_traits.hpp:64,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/bandwidth.hpp:13,
                 from ordering.cpp:4:
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:70:22: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename... T>
                      ^
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:150:46: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename T, typename U, typename... V>
                                              ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -I/usr/local/include    -fpic  -g -O2  -c planar.cpp -o planar.o
In file included from rbgl_trimmed_boost_1_49_0/boost/type_traits.hpp:22:0,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/boyer_myrvold_planar_test.hpp:14,
                 from planar.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:70:22: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename... T>
                      ^
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:150:46: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename T, typename U, typename... V>
                                              ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -I/usr/local/include    -fpic  -g -O2  -c shortestPath.cpp -o shortestPath.o
In file included from rbgl_trimmed_boost_1_49_0/boost/type_traits.hpp:22:0,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:32,
                 from shortestPath.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:70:22: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename... T>
                      ^
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:150:46: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename T, typename U, typename... V>
                                              ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -I/usr/local/include    -fpic  -g -O2  -c sna.cpp -o sna.o
In file included from rbgl_trimmed_boost_1_49_0/boost/type_traits.hpp:22:0,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:32,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:29,
                 from sna.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:70:22: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename... T>
                      ^
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:150:46: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename T, typename U, typename... V>
                                              ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -I/usr/local/include    -fpic  -g -O2  -c transitive_closure.cpp -o transitive_closure.o
In file included from rbgl_trimmed_boost_1_49_0/boost/type_traits.hpp:22:0,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/reverse_graph.hpp:13,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/transpose_graph.hpp:16,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/strong_components.hpp:262,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/transitive_closure.hpp:18,
                 from transitive_closure.cpp:16:
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:70:22: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename... T>
                      ^
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:150:46: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename T, typename U, typename... V>
                                              ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -Irbgl_trimmed_boost_1_49_0 -I/usr/local/include    -fpic  -g -O2  -c wavefront.cpp -o wavefront.o
In file included from rbgl_trimmed_boost_1_49_0/boost/type_traits.hpp:22:0,
                 from rbgl_trimmed_boost_1_49_0/boost/detail/numeric_traits.hpp:64,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/bandwidth.hpp:13,
                 from wavefront.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:70:22: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename... T>
                      ^
rbgl_trimmed_boost_1_49_0/boost/type_traits/common_type.hpp:150:46: warning: variadic templates only available with -std=c++11 or -std=gnu++11
     template<typename T, typename U, typename... V>
                                              ^
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o shortestPath.o sna.o transitive_closure.o wavefront.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/RBGL/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RBGL'
    finding HTML links ... done
    FileDep                                 html  
    RBGL.overview                           html  
    astarSearch                             html  
    bandwidth                               html  
    bccluster                               html  
    bellman.ford.sp                         html  
    betweenness                             html  
    bfs                                     html  
    biConnComp                              html  
    boyerMyrvoldPlanarityTest               html  
    chrobakPayneStraightLineDrawing         html  
    clusteringCoef                          html  
    clusteringCoefAppr                      html  
    coloring                                html  
    connectedComp                           html  
    dag.sp                                  html  
    defunct                                 html  
    dijkstra.sp                             html  
    dominatorTree                           html  
    edgeConn                                html  
    edmondsMaxCardinalityMatching           html  
    edmondsOptimumBranching                 html  
    extractPath                             html  
    floyd.warshall.all.pairs.sp             html  
    gprofile                                html  
    graphGenerator                          html  
    highlyConnSG                            html  
    incrConnComp                            html  
    is.triangulated                         html  
    isKuratowskiSubgraph                    html  
    isStraightLineDrawing                   html  
    isomorphism                             html  
    johnson.all.pairs.sp                    html  
    kCliques                                html  
    kCores                                  html  
    lambdaSets                              html  
    layout                                  html  
    makeBiconnectedPlanar                   html  
    makeConnected                           html  
    makeMaximalPlanar                       html  
    maxClique                               html  
    maxFlow                                 html  
    maximumCycleRatio                       html  
    minCut                                  html  
    minimumCycleRatio                       html  
    mstree.kruskal                          html  
    mstree.prim                             html  
    ordering                                html  
    planarCanonicalOrdering                 html  
    planarFaceTraversal                     html  
    removeSelfLoops                         html  
    separates                               html  
    sloanStartEndVertices                   html  
    sp.between                              html  
    strongComp                              html  
    transClosure                            html  
    transitivity                            html  
    tsort                                   html  
    wavefront                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RBGL)
Making 'packages.html' ... done