RFmarkerDetector

Package: RFmarkerDetector
Type: Package
Title: Multivariate Analysis of Metabolomics Data using Random Forests
Version: 1.0.1
Date: 2016-02-28
Author: Piergiorgio Palla, Giuliano Armano
Maintainer: Piergiorgio Palla <piergiorgio.palla@diee.unica.it>
Description: A collection of tools for multivariate analysis of metabolomics
data, which includes several preprocessing methods (normalization, scaling)
and various exploration and data visualization techniques (Principal
Components Analysis and Multi Dimensional Scaling). The core of the package
is the Random Forest algorithm used for the construction, optimization and
validation of classification models with the aim of identifying potentially
relevant biomarkers.
License: GPL-3
LazyData: true
Imports: randomForest, ggplot2, UsingR, WilcoxCV, ROCR, methods
Depends: AUCRF
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-02-28 19:06:10 UTC; Pg
Repository: CRAN
Date/Publication: 2016-02-29 01:29:57

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RFmarkerDetector' ...
** package 'RFmarkerDetector' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RFmarkerDetector'
    finding HTML links ... done
    aucMCV                                  html  
    autoscale                               html  
    cachexiaData                            html  
    combinatorialRFMCCV                     html  
    forestPerformance                       html  
    getAvgAUC                               html  
    getBestRFModel                          html  
    lqvarFilter                             html  
    mccv                                    html  
    mds                                     html  
    meanCenter                              html  
    optimizeMTRY                            html  
    paretoscale                             html  
    pca                                     html  
    plot.mccv                               html  
    plot.mds                                html  
    plot.pca.loadings                       html  
    plot.pca.scores                         html  
    plotAUCvsCombinations                   html  
    plotOOBvsMTRY                           html  
    plotVarFreq                             html  
    rfMCCV                                  html  
    rfMCCVPerf                              html  
    rsd                                     html  
    rsdFilter                               html  
    screeplot                               html  
    simpleData                              html  
    tuneMTRY                                html  
    tuneNTREE                               html  
** building package indices
** testing if installed package can be loaded
* DONE (RFmarkerDetector)
Making 'packages.html' ... done