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Last data update: 2014.03.03

RPostgreSQL

Package: RPostgreSQL
Version: 0.4-1
Date: $Date: 2013-03-27 15:32:53 +0900 (Wed, 27 Mar 2013) $
Title: R interface to the PostgreSQL database system
Author: Joe Conway, Dirk Eddelbuettel, Tomoaki Nishiyama, Sameer Kumar
Prayaga (during 2008), Neil Tiffin
Maintainer: Tomoaki Nishiyama <tomoakin@staff.kanazawa-u.ac.jp>
Description: Database interface and PostgreSQL driver for R This
package provides a Database Interface (DBI) compliant driver
for R to access PostgreSQL database systems.
.
In order to build and install this package from source, PostgreSQL
itself must be present your system to provide PostgreSQL
functionality via its libraries and header files. These files
are provided as postgresql-devel package under some Linux
distributions.
.
On Microsoft Windows system the attached libpq library source will be
used.
.
A wiki and issue tracking system for the package are available at
Google Code at https://code.google.com/p/rpostgresql/ .
LazyLoad: true
Depends: R (>= 2.9.0), methods, DBI (>= 0.1-4)
License: GPL-2 | file LICENSE
Copyright: Authors listed above, PostgreSQL Global Development Group,
and The Regents of the University of California
Collate: S4R.R zzz.R PostgreSQLSupport.R dbObjectId.R PostgreSQL.R
URL: https://code.google.com/p/rpostgresql/,
http://www.stat.bell-labs.com/RS-DBI, http://www.postgresql.org
Packaged: 2016-05-08 20:59:35 UTC; ligges
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-05-08 23:09:20

● 0 images, 25 functions, 1 datasets
● Reverse Depends: 1

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RPostgreSQL' ...
** package 'RPostgreSQL' successfully unpacked and MD5 sums checked
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for pg_config... /usr/bin/pg_config
checking for "/usr/include/postgresql/libpq-fe.h"... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include/postgresql -I/usr/local/include    -fpic  -g -O2  -c RS-DBI.c -o RS-DBI.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include/postgresql -I/usr/local/include    -fpic  -g -O2  -c RS-PQescape.c -o RS-PQescape.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include/postgresql -I/usr/local/include    -fpic  -g -O2  -c RS-PostgreSQL.c -o RS-PostgreSQL.o
In file included from /home/ddbj/local/lib64/R/include/Rdefines.h:36:0,
                 from S4R.h:64,
                 from RS-DBI.h:29,
                 from RS-PostgreSQL.h:25,
                 from RS-PostgreSQL.c:17:
RS-PostgreSQL.c: In function 'RS_PostgreSQL_createDataMappings':
RS-PostgreSQL.c:446:13: warning: passing argument 1 of 'Rf_protect' from incompatible pointer type [-Wincompatible-pointer-types]
     PROTECT(flds = RS_DBI_allocFields(num_fields));
             ^
/home/ddbj/local/lib64/R/include/Rinternals.h:661:31: note: in definition of macro 'PROTECT'
 #define PROTECT(s) Rf_protect(s)
                               ^
/home/ddbj/local/lib64/R/include/Rinternals.h:1348:6: note: expected 'SEXP {aka struct SEXPREC *}' but argument is of type 'RS_DBI_fields * {aka struct st_sdbi_fields *}'
 SEXP Rf_protect(SEXP);
      ^
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include/postgresql -I/usr/local/include    -fpic  -g -O2  -c RS-pgsql-copy.c -o RS-pgsql-copy.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include/postgresql -I/usr/local/include    -fpic  -g -O2  -c RS-pgsql-getResult.c -o RS-pgsql-getResult.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include/postgresql -I/usr/local/include    -fpic  -g -O2  -c RS-pgsql-pqexec.c -o RS-pgsql-pqexec.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/include/postgresql -I/usr/local/include    -fpic  -g -O2  -c RS-pgsql-pqexecparams.c -o RS-pgsql-pqexecparams.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o RPostgreSQL.so RS-DBI.o RS-PQescape.o RS-PostgreSQL.o RS-pgsql-copy.o RS-pgsql-getResult.o RS-pgsql-pqexec.o RS-pgsql-pqexecparams.o -L/usr/lib/x86_64-linux-gnu -lpq -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/RPostgreSQL/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'format' from package 'base' in package 'RPostgreSQL'
Creating a generic function for 'print' from package 'base' in package 'RPostgreSQL'
Creating a generic function for 'summary' from package 'base' in package 'RPostgreSQL'
** help
*** installing help indices
  converting help for package 'RPostgreSQL'
    finding HTML links ... done
    PostgreSQL                              html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/PostgreSQL.Rd:26: missing file link 'fetch'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/PostgreSQL.Rd:76: missing file link 'dbUnloadDriver'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/PostgreSQL.Rd:84: missing file link 'fetch'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/PostgreSQL.Rd:89: missing file link 'dbCommit'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/PostgreSQL.Rd:90: missing file link 'dbRollback'
    PostgreSQLConnection-class              html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/PostgreSQLConnection-class.Rd:20: missing file link 'dbCommit'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/PostgreSQLConnection-class.Rd:32: missing file link 'dbRollback'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/PostgreSQLConnection-class.Rd:34: missing file link 'dbWriteTable'
    PostgreSQLDriver-class                  html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/PostgreSQLDriver-class.Rd:25: missing file link 'dbUnloadDriver'
    PostgreSQLObject-class                  html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/PostgreSQLObject-class.Rd:20: missing file link 'isSQLKeyword'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/PostgreSQLObject-class.Rd:22: missing file link 'SQLKeywords'
    PostgreSQLResult-class                  html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/PostgreSQLResult-class.Rd:31: missing file link 'fetch'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/PostgreSQLResult-class.Rd:32: missing file link 'fetch'
    S4R                                     html  
    dbApply-methods                         html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbApply-methods.Rd:27: missing file link 'fetch'
    dbApply                                 html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbApply.Rd:37: missing file link 'fetch'
    dbCallProc-methods                      html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbCallProc-methods.Rd:31: missing file link 'fetch'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbCallProc-methods.Rd:32: missing file link 'dbCommit'
    dbCommit-methods                        html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbCommit-methods.Rd:36: missing file link 'fetch'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbCommit-methods.Rd:37: missing file link 'dbCommit'
    dbConnect-methods                       html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbConnect-methods.Rd:58: missing file link 'fetch'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbConnect-methods.Rd:59: missing file link 'dbCommit'
    dbDataType-methods                      html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbDataType-methods.Rd:33: missing file link 'isSQLKeyword'
    dbDriver-methods                        html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbDriver-methods.Rd:26: missing file link 'fetch'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbDriver-methods.Rd:44: missing file link 'fetch'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbDriver-methods.Rd:45: missing file link 'dbCommit'
    dbGetInfo-methods                       html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbGetInfo-methods.Rd:47: missing file link 'fetch'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbGetInfo-methods.Rd:48: missing file link 'dbCommit'
    dbListTables-methods                    html  
    dbObjectId-class                        html  
    dbReadTable-methods                     html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbReadTable-methods.Rd:119: missing file link 'isSQLKeyword'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbReadTable-methods.Rd:124: missing file link 'fetch'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbReadTable-methods.Rd:125: missing file link 'dbCommit'
    dbSendQuery-methods                     html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbSendQuery-methods.Rd:40: missing file link 'fetch'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbSendQuery-methods.Rd:41: missing file link 'dbCommit'
    dbSetDataMappings-methods               html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/dbSetDataMappings-methods.Rd:33: missing file link 'fetch'
    fetch-methods                           html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/fetch-methods.Rd:46: missing file link 'dbCommit'
    isPostgresqlIdCurrent                   html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/isPostgresqlIdCurrent.Rd:34: missing file link 'fetch'
    make.db.names-methods                   html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/make.db.names-methods.Rd:69: missing file link 'dbWriteTable'
    postgresqlBuildTableDefinition          html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/postgresqlBuildTableDefinition.Rd:41: missing file link 'fetch'
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/postgresqlBuildTableDefinition.Rd:42: missing file link 'dbCommit'
    postgresqlDBApply                       html  
Rd warning: /tmp/RtmpaRxupU/R.INSTALL81e74775f4f/RPostgreSQL/man/postgresqlDBApply.Rd:75: missing file link 'fetch'
    postgresqlSupport                       html  
    summary-methods                         html  
** building package indices
** testing if installed package can be loaded
* DONE (RPostgreSQL)
Making 'packages.html' ... done