RUVSeq

Package: RUVSeq
Version: 1.6.2
Title: Remove Unwanted Variation from RNA-Seq Data
Description: This package implements the remove unwanted variation
(RUV) methods of Risso et al. (2014) for the normalization of
RNA-Seq read counts between samples.
Authors@R: c(person("Davide", "Risso", email = "risso.davide@gmail.com",
role = c("aut", "cre", "cph")),
person("Sandrine", "Dudoit", role = "aut"),
person("Lorena", "Pantano", role = "ctb"),
person("Kamil", "Slowikowski", role = "ctb"))
Author: Davide Risso [aut, cre, cph], Sandrine Dudoit [aut], Lorena Pantano [ctb], Kamil Slowikowski [ctb]
Maintainer: Davide Risso <risso.davide@gmail.com>
Date: 04-15-2014
Imports: methods, MASS
Depends: Biobase, EDASeq (>= 1.99.1), edgeR
Suggests: BiocStyle, knitr, RColorBrewer, zebrafishRNASeq, DESeq2
VignetteBuilder: knitr
License: Artistic-2.0
LazyLoad: yes
biocViews: DifferentialExpression, Preprocessing, RNASeq, Software
URL: https://github.com/drisso/RUVSeq
BugReports: https://github.com/drisso/RUVSeq/issues
NeedsCompilation: no
Packaged: 2016-05-16 04:35:28 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RUVSeq' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RUVSeq'
    finding HTML links ... done
    RUVSeq-package                          html  
    RUVg                                    html  
    finding level-2 HTML links ... done

    RUVr                                    html  
    RUVs                                    html  
    makeGroups                              html  
    residuals.DGEGLM                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RUVSeq)
Making 'packages.html' ... done