R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 6 of 6 found.
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RUVSeq-package (Package: RUVSeq) :

This package implements the remove unwanted variation (RUV) methods of Risso et al. (2014) for the normalization of RNA-Seq read counts between samples.

● Data Source: BioConductor
● Keywords: package
● Alias: RUVSeq, RUVSeq-package
● 0 images

RUVg-methods (Package: RUVSeq) :

This function implements the RUVg method of Risso et al. (2014).

● Data Source: BioConductor
● Keywords:
● Alias: RUVg, RUVg,SeqExpressionSet,character,numeric-method, RUVg,matrix,ANY,numeric-method, RUVg-methods
● 3 images

RUVr-methods (Package: RUVSeq) :

This function implements the RUVr method of Risso et al. (2014).

● Data Source: BioConductor
● Keywords:
● Alias: RUVr, RUVr,SeqExpressionSet,character,numeric,matrix-method, RUVr,matrix,ANY,numeric,matrix-method, RUVr-methods
● 0 images

RUVs-methods (Package: RUVSeq) :

This function implements the RUVs method of Risso et al. (2014).

● Data Source: BioConductor
● Keywords:
● Alias: RUVs, RUVs,SeqExpressionSet,character,numeric,matrix-method, RUVs,matrix,ANY,numeric,matrix-method, RUVs-methods
● 0 images

makeGroups (Package: RUVSeq) : Make a matrix suitable for use with RUVSeq methods such as code{link{RUVs

Each row in the returned matrix corresponds to a set of replicate samples. The number of columns is the size of the largest set of replicates; rows for smaller sets are padded with -1 values.

● Data Source: BioConductor
● Keywords:
● Alias: makeGroups
● 0 images

residuals.DGEGLM (Package: RUVSeq) :

This function implements the residuals method for the edgeR function glmFit.

● Data Source: BioConductor
● Keywords:
● Alias: residuals.DGEGLM
● 0 images