RareVariantVis

Package: RareVariantVis
Type: Package
Title: Visualization of rare variants in whole genome sequencing data
Version: 1.6.2
Date: 2016-04-23
Author: Tomasz Stokowy
Maintainer: Tomasz Stokowy <tomasz.stokowy@k2.uib.no>
Description: Genomic variants can be analyzed and visualized using many
tools. Unfortunately, number of tools for global interrogation
of variants is limited. Package RareVariantVis aims to present
genomic variants (especially rare ones) in a global, per
chromosome way. Visualization is performed in two ways -
standard that outputs png figures and interactive that uses
JavaScript d3 package. Interactive visualization allows to
analyze trio/family data, for example in search for causative
variants in rare Mendelian diseases.
License: Artistic-2.0
LazyData: TRUE
Depends: BiocGenerics, VariantAnnotation, googleVis
Imports: S4Vectors, IRanges, GenomeInfoDb, GenomicRanges
Suggests: knitr, AshkenazimSonChr21
VignetteBuilder: knitr
biocViews: GenomicVariation, Sequencing, WholeGenome
NeedsCompilation: no
Packaged: 2016-05-16 05:29:45 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RareVariantVis' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RareVariantVis'
    finding HTML links ... done
    CentromeresHg19                         html  
    FatherRareVariantsChr21                 html  
    MotherRareVariantsChr21                 html  
    SonRareVariantsChr21                    html  
    chromosomeVis                           html  
    movingAverage                           html  
    multipleVis                             html  
    rareVariantVis                          html  
    trioVis                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RareVariantVis)
Making 'packages.html' ... done