RedeR

Package: RedeR
Type: Package
Title: Interactive visualization and manipulation of nested networks
Version: 1.20.0
Date: 2016-03-11
Author: Mauro Castro, Xin Wang, Florian Markowetz
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>
Depends: R (>= 2.15), methods, igraph
Imports: RCurl, XML, pvclust
Suggests: PANR
SystemRequirements: Java Runtime Environment (>= 6)
Description: RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations.
License: GPL (>= 2)
biocViews: Infrastructure, GraphAndNetwork, Software, Network,
Visualization, DataRepresentation
URL: http://genomebiology.com/2012/13/4/R29
LazyLoad: yes
NeedsCompilation: no
Packaged: 2016-05-04 04:08:51 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RedeR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RedeR'
    finding HTML links ... done
    RedPort-class                           html  
    RedPort                                 html  
    RedeR-package                           html  
    RedeR.data                              html  
    addEdgeBetweenContainers                html  
    addEdges                                html  
    addGraph                                html  
    addLegend                               html  
Rd warning: /tmp/Rtmpt6lMny/R.INSTALL3b642bcaf8ba/RedeR/man/addLegend.Rd:31: missing file link 'att.setv'
Rd warning: /tmp/Rtmpt6lMny/R.INSTALL3b642bcaf8ba/RedeR/man/addLegend.Rd:31: missing file link 'att.sete'
Rd warning: /tmp/Rtmpt6lMny/R.INSTALL3b642bcaf8ba/RedeR/man/addLegend.Rd:61: missing file link 'att.setv'
Rd warning: /tmp/Rtmpt6lMny/R.INSTALL3b642bcaf8ba/RedeR/man/addLegend.Rd:62: missing file link 'att.sete'
    addNodes                                html  
    addSeries                               html  
    addSubgraph                             html  
    addSubgraph.list                        html  
    att                                     html  
    calld                                   html  
    cea                                     html  
    deSelectEdges                           html  
    deSelectGraph                           html  
    deSelectNodes                           html  
    deleteEdges                             html  
    deleteNodes                             html  
    deleteSelectedEdges                     html  
    deleteSelectedNodes                     html  
    duplicateGraph                          html  
    exitd                                   html  
    getContainerComponets                   html  
    getEdgeIDs                              html  
    getEdges                                html  
    getGraph                                html  
    getNodeIDs                              html  
    getNodes                                html  
    getSourceEdgeIDs                        html  
    getTargetEdgeIDs                        html  
    gtoy.rm                                 html  
    isDynamicsActive                        html  
    mergeNodes                              html  
    mergeOutEdges                           html  
    nestNodes                               html  
    nesthc                                  html  
    ping                                    html  
    relax                                   html  
    resetd                                  html  
    selectAllEdges                          html  
    selectAllNodes                          html  
    selectEdges                             html  
    selectGraph                             html  
    selectNodes                             html  
    setArrowDirection                       html  
    subg                                    html  
    updateContainerSize                     html  
    updateGraph                             html  
    version                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RedeR)
Making 'packages.html' ... done