STRINGdb

Package: STRINGdb
Type: Package
Title: STRINGdb (Search Tool for the Retrieval of Interacting proteins
database)
Version: 1.12.0
Date: 2016-03-31
Author: Andrea Franceschini <andrea.franceschini@isb-sib.ch>
Maintainer: Alexander Roth <alexander.roth@isb-sib.ch>
Description: The STRINGdb package provides a R interface to the STRING protein-protein interactions database (http://www.string-db.org).
License: GPL-2
Depends: R (>= 2.14.0)
Imports: png, sqldf, plyr, igraph, RCurl, methods, RColorBrewer,
gplots, hash, plotrix
Suggests: RUnit, BiocGenerics
biocViews: Network
NeedsCompilation: no
Packaged: 2016-05-04 05:12:43 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'STRINGdb' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'STRINGdb'
    finding HTML links ... done
    STRINGdb-class                          html  
    add_diff_exp_color                      html  
    add_proteins_description                html  
    benchmark_ppi                           html  
    benchmark_ppi_pathway_view              html  
    coeffOfvar                              html  
    delColDf                                html  
    diff_exp_example1                       html  
    downloadAbsentFile                      html  
    downloadAbsentFileSTRING                html  
    get_STRING_species                      html  
    get_aliases                             html  
    get_annotations                         html  
    get_annotations_desc                    html  
    get_bioc_graph                          html  
    get_clusters                            html  
    get_enrichment                          html  
    get_graph                               html  
    get_homologs                            html  
    get_homologs_besthits                   html  
    get_interactions                        html  
    get_link                                html  
    get_neighbors                           html  
    get_png                                 html  
    get_ppi_enrichment                      html  
    get_ppi_enrichment_full                 html  
    get_proteins                            html  
    get_pubmed                              html  
    get_pubmed_interaction                  html  
    get_subnetwork                          html  
    get_summary                             html  
    get_term_proteins                       html  
    interactions                            html  
    load                                    html  
    load_all                                html  
    map                                     html  
    mp                                      html  
    multi_map_df                            html  
    plot_network                            html  
    plot_ppi_enrichment                     html  
    plot_ppi_enrichment_graph               html  
    post_payload                            html  
    ppi_enrichment                          html  
    ppi_enrichment_full                     html  
    ppie.compLambda                         html  
    ppie.compLambdaL1L2                     html  
    ppie.compPij                            html  
    ppie.getNumEdgesBetween                 html  
    remove_homologous_interactions          html  
    renameColDf                             html  
    set_background                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (STRINGdb)
Making 'packages.html' ... done